Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00171 ATGGTTGGCAATGACATGGACCAAAAGAATGCATATGTCGGTGATGAAGCGTTGTTTAATTATGATACTGTGACCCTCAAGCACCCAATTGAACATGGAATTGTGAGGTATTGGGATGATATGGAAAAGATTTTCCATCATACCTTCTATAATGAGCTTCGTGTTACCCCGGAAAAGCATCCAGTTATGCTAACTGAGGTTCCTCTTAATCCCAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTTACTACCCCTTCTATATATATAAGCTTTAGTGCTCTCCATATACTATATGCGTCTGGTCGTACTACTGGTATTGTTATGGATTCTGGTGGTGGAATGAGTTGTGTTGTCCCTGTGTACAATGGCCAACCTATCCCATATGCCACTCAACGTCTTGATCTGGCTGGTGGTGACATAACTGATTTCTTGATGAAAATTTTGAATAAACGTGGTTATTCTTTCAACACCTCAGCAGAACGTGAAATTATAAGAGATATGAAAGAAAAGTTGGCTTACATTGCCCTTGACTATGAGCAAGAGTTGGTGACAGGCAAGACAAACAATAGTTTGAAGAGATATGAGTTGCCTGACGGGAGGGTAATCAGTATTGGTGATGAGTGTTTCAAATGTGCAGAGGTGTTGTTCCAACCATCCTTGATACAAAGTAAAGAACCTGGCATTCATGAAGCAATATACAACTCCATAATGAAATGTGATGATGATATCAGGAAAAATTTGTATGATAACATTATCCTTTCTGGGGGAACAACCTTGTTACCAAATATTGTTGATAGAATGAGGAAGGAAATCAGTGTATTAGCCCCAAGAAGCATGAAGATCAGGGTTGTGGCGCCACCTGAGAGAAAGTATGTTGCTTGGATTGCTTGTTCTATCTTGGCATCCCTTAGCACCTTCAAGCCGATGTGGATTACAAAAGCAAAATATGATGAGTTTGGGCCATCAGTTGTGCATAGAATGCGCTTTTAA 1002 0.4012 MVGNDMDQKNAYVGDEALFNYDTVTLKHPIEHGIVRYWDDMEKIFHHTFYNELRVTPEKHPVMLTEVPLNPKANREKMTQIMFETFTTPSIYISFSALHILYASGRTTGIVMDSGGGMSCVVPVYNGQPIPYATQRLDLAGGDITDFLMKILNKRGYSFNTSAEREIIRDMKEKLAYIALDYEQELVTGKTNNSLKRYELPDGRVISIGDECFKCAEVLFQPSLIQSKEPGIHEAIYNSIMKCDDDIRKNLYDNIILSGGTTLLPNIVDRMRKEISVLAPRSMKIRVVAPPERKYVAWIACSILASLSTFKPMWITKAKYDEFGPSVVHRMRF. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00171 333 Gene3D - 97 296 - -
Seca2g00171 333 FunFam Major actin 203 296 - -
Seca2g00171 333 Gene3D Actin; Chain A, domain 4 139 229 - -
Seca2g00171 333 PANTHER ACTIN 10 326 IPR004000 -
Seca2g00171 333 SUPERFAMILY Actin-like ATPase domain 105 332 IPR043129 -
Seca2g00171 333 SMART actin_3 1 333 IPR004000 -
Seca2g00171 333 Pfam Actin 7 330 IPR004000 -
Seca2g00171 333 CDD NBD_sugar-kinase_HSP70_actin 17 140 - -
Seca2g00171 333 FunFam Actin, alpha skeletal muscle 1 105 - -
Seca2g00171 333 SUPERFAMILY Actin-like ATPase domain 4 111 IPR043129 -
Seca2g00171 333 FunFam Actin, alpha skeletal muscle 139 229 - -
Seca2g00171 333 Gene3D - 7 327 - -
Seca2g00171 333 PRINTS Actin signature 99 118 IPR004000 -
Seca2g00171 333 PRINTS Actin signature 194 210 IPR004000 -
Seca2g00171 333 PRINTS Actin signature 8 19 IPR004000 -
Seca2g00171 333 PRINTS Actin signature 74 87 IPR004000 -
Seca2g00171 333 PRINTS Actin signature 43 61 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00171 Seca-Chr2 2522600 2525124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00171 1 333 Cytoskeleton Gene Families AT3G12110 70.659 6.98e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00171 K10355 - gmx:100781831 479.944