Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g00148 | ATGATGTTTCACATTGCTGTTATCATTTACTATATGCAGGATATCATAGTCCCGTCTCTCATGAACAAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAACCTATGCTTGCGAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAATATGATGGTCAGCGAGCTCAAATTCACAGATTAGTTGATGGTTCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACTTCGAGATTTCCTGATCTGATTGACATAATTAAAGAATCCTGCAAGCCTGTTGCATCAACTTTCATACTGGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAAGCAAAGATACTTTAGTTACTACAGAGAGCATAAAGGTGGGCATTTGCGTCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTAAGACGAAAGTATCTGAAGGATTTGTTTTATGATGAAAAACCTGGGTATTTTGAATATGCAAAAGAAACAACTGTTGAAGAAGATGATGCTTGCTTAACGTGTGAAGCTACATTAACTAAGATAAATGCTTTCCTGGAAGATGCCTTTCGCTCTTCATGTGAAGGAATTATGGTGAAATCATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGACACTCTTGATTTAGTACCAATCGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAAATGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGGTTCTCAGATTCATTTTATATAGAGGTATAA | 975 | 0.3744 | MMFHIAVIIYYMQDIIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLVDGSIRVFSRNGDESTSRFPDLIDIIKESCKPVASTFILDAEVVGIDRKNGYRIMSFQELSSRGRGSKDTLVTTESIKVGICVFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTVEEDDACLTCEATLTKINAFLEDAFRSSCEGIMVKSLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPENEEYQSVCRVMSGFSDSFYIEV. | 325 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g00148 | 324 | Gene3D | DNA ligase/mRNA capping enzyme | 71 | 202 | - | - | |
Seca2g00148 | 324 | Gene3D | - | 52 | 266 | - | - | |
Seca2g00148 | 324 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 66 | 74 | IPR016059 | GO:0003909 | |
Seca2g00148 | 324 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 14 | 323 | - | - | |
Seca2g00148 | 324 | CDD | Adenylation_DNA_ligase_I_Euk | 33 | 265 | - | - | |
Seca2g00148 | 324 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 153 | 300 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Seca2g00148 | 324 | Gene3D | - | 267 | 324 | IPR012340 | - | |
Seca2g00148 | 324 | FunFam | DNA ligase | 71 | 202 | - | - | |
Seca2g00148 | 324 | NCBIfam | ATP-dependent DNA ligase | 15 | 318 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Seca2g00148 | 324 | Pfam | ATP dependent DNA ligase domain | 42 | 262 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Seca2g00148 | 324 | SUPERFAMILY | Nucleic acid-binding proteins | 271 | 322 | IPR012340 | - | |
Seca2g00148 | 324 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 36 | 268 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g00148 | Seca-Chr2 | 2253350 | 2259634 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g00148 | 14 | 323 | Core DNA Replication Machinery Family | AT1G08130 | 43.548 | 1.14e-88 | 280 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g00148 | - | - | gmx:100807673 | 607.06 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g00148 | 2 | 2253350 | 2259634 | Seca2g00148 | 2 | 2253350 | 2259634 | ECH |