Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00147 ATGGATTCCCAATCTGAACCCCAAACCCTAGAACTAAACTCCATCCAGTTATTCCTCACCGCTCGCCAATCCCTCCAACTCTCACCACCCTCCTCCCTTCCAATCCCAACCTCCTTCCCCCACTCCAAACTCATCCCCAACACCCGCTTCCTCATCGACGCCTTCCGCCACGCCGGAAGCCACTTCTCCGCCTCCTATTTCCTCTCCCACTTCCACTCCGACCACTACTCTCCTCTCTCCTCCTCCTGGTCCCACGGCATCATCTTCTGTTCCCCCACCACCGCTCGTCTTCTCCTTCACGTCCTCAAAATCCCTTCCCCCTTCATCCACCCTCTCCCCCTCAACCAACCCGTTCACATCGACGGTTCCAGAATCACCCTCATTGATGCCAACCACTGCGTCGGTGCCGTTCAATTCCTCTTCGAGGTCCCCTCCAATGGAACCTTCCGGAGGTACGTTCACACAGGCGATTTCCGGTTTTGTAAGTCCATGTTGTTGGAGCCTTCACTTGCTCCTTTTGTTGGTGCTGATGCTGTGTTTTTGGACACCACTTACTGTCACCCTAAGTTTCTGTTTCCCTCACAAGAGGAGTCTGTTGATTATGTCGTTAATGTTGTGAGTGAGCGTGATAGTGATGGTGTGTTGTTTCTTGTTGCTACTTATGTCGTTGGGAAGGAGAGGATTTTGCTTGAGATAGCGCGGAGGTTTAACAAAAAGATACACGTGGATGCTAGGAAGATGGAGATTTTGCGGGTTCTTGGGTATGGGGAGAGTGGTGAGTTTACGGAGGATGGATTGGAGACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACATGGCCTTATTTTAGGCCTAATTTTGTTAAAATGAAGGAGATCATGACTGAGAGAGGGTACTCCAAGGTTGTGGGGTTTGTGCCAACTGGATGGACCTATGAGGTGAAGCGCAATAGGTTTGCAGTCAGGTCCAAGGATTCGTGTCACATTCATCTTGTGCCATATAGTGAGCATTCAAACTATGATGAACTCAGGGAATATGTGAAGTTTTTGAAACCCAAACGTGTTGTTCCCACGGTGGGTTTGGATGTTGAGAAAAGTGACAGCAAACATGCTAACAAAATGAGAAAGTATTTTGCTGGGTTGGTTGATGAGACAGCCAACAAACAGGAGTTTTTAAGGGGTTTTCATCGTGACACTGGTGAAGTGAGTTTCAAGGTTGAGAAGGATTTTAGTGATTCTTTGGAACCAGGGCAAAGCTTGGAGAAAGGAGTCAAGCCATCTGATGTGGAAGGTGATAAAAGTATTAATCTAAGTCCTACTTGCACGCGAGATTCTACTATACTGAATGATGAAGAAAAGGAGAAAATCATTCAAGAACTTAGTTGTTGTTTGCCTGCATGGGTCACTCGAAGTCAGGTGTTAGATCTGATCAGCATCTCAGGGAGAAATGTTGTTGAAGCTGTTTCTAATTTCTACGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCCTGTCAAACTTTGGTTTCAACATCCAAATGCTGCTCATCAAATAACACTGATTCACTTTCTAAATCACCCTTTACAACAATTGACACTCACAAAAATGTTGACATTTTTCCAAGTCAAGACTCCAAATTAACTAATCTGAGGCATACAGTACCAAGTCGTGTTTCCCCTGCCAAAAGAAAGAGTAGTGGAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAATCAGACTCAAGTGGTTCAAAGCAGTCAACGATAACAAGATTCTTCAGCAAAGTAATGCCTAAGATGCCAGGTGGTACTCAGTCTGATCATTGTGGATCAAAGCTTGACCAAAGCCCTAAAGTTGAAGACTTGCTGCCAACTGATGTTGAAAAGTTGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGAATGAGTCATCAAAAAAGTATGCCATCACTGTAATTGAGAAGACAAAAGGAGATGTCAATAAGGCATTGGATATTTATTACTGTAATTCTGGCAATCTTTGTGAAAATAAAATATCAGTTCAAGAGGAGTGCAAAATTGATAAACCTTTAGAGAAGAAGTATGTGTCACAGGAATTGAGAGTTATATCTGATATTTCTGTGCAGAGAGTTTTAAAAGATAATGTAGGTGCAACTTATGTATCTCTACCACCTGAGAAATACAACCCCAAGGAACATGCGTGTTGGAGAGATGGACAGCGTGCACCGTATTTACATCTTGCACGAACCTTCGACCTGCTTGAGGATGAAAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAATAAAATTGCTGCAGACCATGAAAATGTGGAACTGAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGAGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGTACCACCTACACCACTTCAAATTAAGGATGTTTTCTCTGCACTACGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCTTGCCGCGAGAAGGAGATTAAGTTTCTTGTTCGGACCTTGGTAAATATCTCATTTTGTCTTTTTTTGTGGGTGAATAGTTTAGAGGGAGGGGGTTACCTCATTTCAAGGTTATGGCTTGCCACAAGCCTCAATAGGCTTCCAGTGGTGCTTACAAATTGTGTTGCATTTTTGATAAATTTCATCAAGGTCTGTGTAAACTACTTCAATATTGCCAAAAAGAGATATTGTTGA 2913 0.4271 MDSQSEPQTLELNSIQLFLTARQSLQLSPPSSLPIPTSFPHSKLIPNTRFLIDAFRHAGSHFSASYFLSHFHSDHYSPLSSSWSHGIIFCSPTTARLLLHVLKIPSPFIHPLPLNQPVHIDGSRITLIDANHCVGAVQFLFEVPSNGTFRRYVHTGDFRFCKSMLLEPSLAPFVGADAVFLDTTYCHPKFLFPSQEESVDYVVNVVSERDSDGVLFLVATYVVGKERILLEIARRFNKKIHVDARKMEILRVLGYGESGEFTEDGLETNIHVVGWNVLGETWPYFRPNFVKMKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVRSKDSCHIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLRGFHRDTGEVSFKVEKDFSDSLEPGQSLEKGVKPSDVEGDKSINLSPTCTRDSTILNDEEKEKIIQELSCCLPAWVTRSQVLDLISISGRNVVEAVSNFYERETEFHEQVNSCQTLVSTSKCCSSNNTDSLSKSPFTTIDTHKNVDIFPSQDSKLTNLRHTVPSRVSPAKRKSSGSKPNKKVKVKAKSDSSGSKQSTITRFFSKVMPKMPGGTQSDHCGSKLDQSPKVEDLLPTDVEKLYKDEIDQFMQIINGNESSKKYAITVIEKTKGDVNKALDIYYCNSGNLCENKISVQEECKIDKPLEKKYVSQELRVISDISVQRVLKDNVGATYVSLPPEKYNPKEHACWRDGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLVPPTPLQIKDVFSALRKISVQTGNGSTFRKKGIIVHLMRSCREKEIKFLVRTLVNISFCLFLWVNSLEGGGYLISRLWLATSLNRLPVVLTNCVAFLINFIKVCVNYFNIAKKRYC. 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00147 970 Gene3D - 45 361 IPR036866 -
Seca2g00147 970 Gene3D - 191 339 - -
Seca2g00147 970 Pfam DNA repair metallo-beta-lactamase 259 362 IPR011084 -
Seca2g00147 970 MobiDBLite consensus disorder prediction 544 620 - -
Seca2g00147 970 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 36 531 - -
Seca2g00147 970 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 728 908 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca2g00147 970 Pfam DNA ligase N terminus 749 907 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca2g00147 970 CDD SNM1A-1C-like_MBL-fold 40 188 - -
Seca2g00147 970 Gene3D - 726 909 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca2g00147 970 MobiDBLite consensus disorder prediction 544 567 - -
Seca2g00147 970 FunFam DNA ligase 191 339 - -
Seca2g00147 970 SUPERFAMILY Metallo-hydrolase/oxidoreductase 46 362 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00147 Seca-Chr2 2246003 2251466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00147 731 907 Core DNA Replication Machinery Family AT1G08130 38.418 4.82e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00147 - - gmx:100807673 1347.41