Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00124 ATGTTGTCCCTTTCTTCTTTTCCCACCTTCTTCGTTATCTTCTTACTCATCTTCTCTCTCCACCACACGACGTCGTTATCCCCTCATGCAACACTCTCTAGTTGCCACAACACCACCTTCAACTGCGGCACCATCACCAACCTTTCCTACCCTTTCACCGGCGGTGGCCGCCCCTCCCTCTGTGGGCCACCACAGTTCCACTTGAGCTGCAACAACAATGTTCCAGAGTTGAACATCTCCTCAGTGAGTTACCGAGTCCTTCAAATCAACTCAGTGACTCGCACCCTCACCTTAGCAAGATTAGACCTTTGGAACAACACATGTACCCATAACTACGTGAACTCAATTTTTGATGAGACCATCTTCAGCTATGGTTCAGGCAACCGAAACCTCACCTTGTTCTATGGATGCAAAACCCCTGAATTGACCAGTCCGCCAGATAATATGTTTCACTGCGAGATTAATGGAAATAAAAGTGATTCTTATTCTTTAGTTGGTCCATTTCCTTTGGACCCTGTTCTTAGCGTTGTTGAATGTGATGATAGTGTTGGGGTGGCAATTCTGGAAGAGCAGGCTGATAGGCTTGTAAAGAACCGTTCTTTGCTTAGGGAGATTTTGATGAAGGGATTTAATATGAACTATAGCAATCCTTATGACAATGAATGCTTTGATTGTCTTGGTTCTAGTGGCCAGCAGTGTGGGTTTGATTCAGATAACAATGAACCAATTTGTATTTGTGGCGATTGGTTGTGTACTTCTCCAGGATCATCTTCAAAAAGGAACTGGCGGCTTAAGATTGTGATAGGTGCATCAGCAGCTGGTTTTGGAGCAACAATATTCTTTGTTTGGATTATTTGTTACCATAAGAGGCGTATGACTTTTCGGCAAAAGTATGTCTTTGAGGAAAAAAGAAAATTTGTTGACCACAATGTGGAGGCTTTCATGAAAAGTTATGGTTCTTTTGCACCAAGGCGATATAGTTATTCAGAAGTTAAAAGAATCTCAAACTCATTTCTAAATAAACTAGGTGAAGGAGGATATGGTGTTGTCTACAAAGCAAGATTATCTGATGGTCGTCCTGTTGCCGTAAAAGTAATAAGTGAGTCTAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACTTCTCATGTCAACATTGTCTCACTTTTGGGATTCTGTTATGATATGAACAAAAGAGTACTAATATACGAATTCATGCCCAATGGTTCATTAGATAATTTCATCAATAAAACAGGATCTCCAAATGTGATTTGTCATTTTGATTGCAGCATGTTGTATAAAGTTGCAATTGGGGTTGCTCGAGGACTGGAATACTTACATCGAGGGTGCAATACAAGGATTTTACACCTTGATATTAAGCCTCAAAATATTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGACTTGCTAAAATATGCCAAAAGAAGGAAAGCATTGTGTCTATATTAGGCACAAGAGGAACTCCAGGGTACATTGCACCAGAAGTATTTAGTCGAGCATTTGGTGGTGTTTCTCACAAATCTGATGTGTATAGCTATGGTATGTTGATTCTTGAAATGGTTGGTGGAAGAAAGAATTATGATAATGGAGGATCACATACTAGTGAAATGTATTTTCCAGATTGGATATATAAGGATCTTGAGCAAGGTAATATTCACACAAATTATTTGGTCATCACAGAGGAGGAAAATGAGATGGTAAGAAAGATAACCTTGGTGAGTCTATGGTGCATTCAAACAAATCCATCAGACAGGCCATCAATGAGTAAAGTAGTGGAGATGTTACAAGGACCACTTCAGCAAGTTCCATATCCTCCAAAGCCTGTCTTATATTCTCTTGAAAGTAGACCATTACAAATTTCAGATATATCTTCAGACAATATGCAAGAGACAAATTCAATAACAACACAAAAGGATGGTTCTATGGAATTGAATGAAAACTTCTTTTTCATCTTGTCAGTAGTACTAGCAGTACTCCTCTCCACCAGTACCGCGGCCATTGTCTATATGTCGAAGCTTCTCAATGCCCTCACCCCAATTCCGATACCTGTGTTTGGCCAGAGTGTGAAGTTCAATCTTAATAAGGGAGGATATGGTGTTGTTTACAAAGCAAAATTACCGGATGGTCATCTTGGTGCTGTAAAAGTAATAATTGAGTCTAAGGAAAGTGGAGAAGAGTTCATAAATGAAGTTGCTAGTATTAGTAGAACCTCTCATGTGAACATTGTCTCACTTTTGGGATTTTGTTATGATAGGAACAAGAGAGCATTGATCTATGAATTCATGCCCAATGATTCATTAGATAATTTCATTAGTAGAAGAGGATCTCCAAATGCTATTTGTCATCTTAATTGGAGCATGTTGTACAAAATTGCAATTGGGATTGCTAAAGGACTAGAATACTTACATCGAGGGTGCAATACAAGGATTTTACACCTTGATATTAAGCCCCAAAATATTCTTTTGGATGAAGATTTTTACCAAAAAATATCTGATTTTGGATTGGCTAAAATATGCAAAAAGAAGGAGAGTGTTGTGTCTATGTTAGGTACAAGAGGAACACCAGGATACATTGCACCAGAAATATATAGTCGAGCATTTGGTGGCGTTTCTCACAAATCTGATGTGTATAGCTATGGCATGTTGATTCTTGAAATCGTTGGAGCAAGAAAGAGTTCTAATAATGGGGGATCAAATACCAGTGAAATGTATTTTCCAGACTGGATTTATAAAGATCTTGAGCAAGGTAATATTTCCACAGATGTTTTGGCTATCACAGAAGAGGATAATGATATGGCAAGGAAGATGATTTTAGTGAGTCTATGGTGTATTCAAACACACCCAACAGATAGGCCATCAATGAGTAAAGTGGTAGAGATGTTAGAAGGACCACTTCAATCAGTGTCATATCCTCCAAAGCCTGTCTTACGTTCTCCTGAAAGGCCACCTTTACAAATTTCAAATTTATCTTCAGACAATATGCAAGAGACAAATTCAATAACAATGGATGGTTCCATTTAA 3066 0.3845 MLSLSSFPTFFVIFLLIFSLHHTTSLSPHATLSSCHNTTFNCGTITNLSYPFTGGGRPSLCGPPQFHLSCNNNVPELNISSVSYRVLQINSVTRTLTLARLDLWNNTCTHNYVNSIFDETIFSYGSGNRNLTLFYGCKTPELTSPPDNMFHCEINGNKSDSYSLVGPFPLDPVLSVVECDDSVGVAILEEQADRLVKNRSLLREILMKGFNMNYSNPYDNECFDCLGSSGQQCGFDSDNNEPICICGDWLCTSPGSSSKRNWRLKIVIGASAAGFGATIFFVWIICYHKRRMTFRQKYVFEEKRKFVDHNVEAFMKSYGSFAPRRYSYSEVKRISNSFLNKLGEGGYGVVYKARLSDGRPVAVKVISESKGNGEEFINEVASISRTSHVNIVSLLGFCYDMNKRVLIYEFMPNGSLDNFINKTGSPNVICHFDCSMLYKVAIGVARGLEYLHRGCNTRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSILGTRGTPGYIAPEVFSRAFGGVSHKSDVYSYGMLILEMVGGRKNYDNGGSHTSEMYFPDWIYKDLEQGNIHTNYLVITEEENEMVRKITLVSLWCIQTNPSDRPSMSKVVEMLQGPLQQVPYPPKPVLYSLESRPLQISDISSDNMQETNSITTQKDGSMELNENFFFILSVVLAVLLSTSTAAIVYMSKLLNALTPIPIPVFGQSVKFNLNKGGYGVVYKAKLPDGHLGAVKVIIESKESGEEFINEVASISRTSHVNIVSLLGFCYDRNKRALIYEFMPNDSLDNFISRRGSPNAICHLNWSMLYKIAIGIAKGLEYLHRGCNTRILHLDIKPQNILLDEDFYQKISDFGLAKICKKKESVVSMLGTRGTPGYIAPEIYSRAFGGVSHKSDVYSYGMLILEIVGARKSSNNGGSNTSEMYFPDWIYKDLEQGNISTDVLAITEEDNDMARKMILVSLWCIQTHPTDRPSMSKVVEMLEGPLQSVSYPPKPVLRSPERPPLQISNLSSDNMQETNSITMDGSI. 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00124 1021 Gene3D Phosphorylase Kinase; domain 1 708 777 - -
Seca2g00124 1021 ProSiteProfiles Protein kinase domain profile. 702 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00124 1021 Gene3D Phosphorylase Kinase; domain 1 310 410 - -
Seca2g00124 1021 PANTHER RUST RESISTANCE KINASE LR10-RELATED 308 636 IPR045874 GO:0004672
Seca2g00124 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Seca2g00124 1021 Pfam Protein kinase domain 709 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00124 1021 Pfam Protein kinase domain 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00124 1021 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
Seca2g00124 1021 Gene3D Transferase(Phosphotransferase) domain 1 778 985 - -
Seca2g00124 1021 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Seca2g00124 1021 FunFam PR5-like receptor kinase 777 987 - -
Seca2g00124 1021 SUPERFAMILY Protein kinase-like (PK-like) 316 610 IPR011009 -
Seca2g00124 1021 SMART serkin_6 706 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00124 1021 SMART serkin_6 336 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00124 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Seca2g00124 1021 FunFam PR5-like receptor kinase 411 620 - -
Seca2g00124 1021 SUPERFAMILY Protein kinase-like (PK-like) 704 976 IPR011009 -
Seca2g00124 1021 ProSiteProfiles Protein kinase domain profile. 336 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00124 1021 Pfam Wall-associated receptor kinase galacturonan-binding 35 99 IPR025287 GO:0030247
Seca2g00124 1021 Pfam Wall-associated receptor kinase C-terminal 172 248 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00124 Seca-Chr2 1930233 1937114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00124 1 642 Receptor kinase-like Gene Family AT5G38260 41.374 2.91e-150 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca2g00124 Pkinase 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00124 - - aprc:113862598 741.495