Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00118 ATGGGTGGTGATGTTGATTATGATGCAACAAAATCCTCCATTCCCAGTTGCACATCTCTAAAGCTCTTTGGCATCAACATTCACAATGAATCATCATCAGCTGCAGCAGGTGGTGGTGGAATTAGTAATTTGAAGATGAATGAATCATCTCCTCCTCCAGCTGGTGATGGTAGAAAATATGAATGTCAATATTGTTGCAGAGAATTTGCAAACTCACAAGCATTAGGAGGACATCAAAACGCACACAAAAAAGAAAGACAACTCTTGAAACGCGCTCAAATGCAAGCTGCTCATCGTGGCTTTATCATCCAAAACACAACAATCCTATCACCACCACCACCACATCATCATCATTACCAGCTGGCGGCACCACCGTCTCAGCCATGGCTATATGGAGCATATCATCATCAATATCATTCATCATCATCAGGAGGAGCATTTGTGGCTCCTCAAAGACGTGTCTATGCTGCAAGTACAACTGATGGCCGTGTACGCCACCACCCTCTGCCGCCTGGCTTTAATGGCGGCGATGGCGGTTTGAATTTGCATCTTAGTCTTTAA 561 0.4439 MGGDVDYDATKSSIPSCTSLKLFGINIHNESSSAAAGGGGISNLKMNESSPPPAGDGRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAAHRGFIIQNTTILSPPPPHHHHYQLAAPPSQPWLYGAYHHQYHSSSSGGAFVAPQRRVYAASTTDGRVRHHPLPPGFNGGDGGLNLHLSL. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00118 186 PANTHER ZINC FINGER PROTEIN 5 13 186 IPR044299 GO:0010090
Seca2g00118 186 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Seca2g00118 186 MobiDBLite consensus disorder prediction 159 180 - -
Seca2g00118 186 FunFam Zinc finger protein 6 49 110 - -
Seca2g00118 186 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Seca2g00118 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Seca2g00118 186 Gene3D Classic Zinc Finger 45 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00118 Seca-Chr2 1851916 1852476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00118 18 134 C2H2 Transcription Factor Family AT1G67030 48.175 1.55e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00118 - - gmx:100527555 140.584