Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00104 ATGTACACCTCAAGGAAGAAAATCCACAAGGATAAGGAAGTTGAGCCCACTGAATTTGAGGAGACAGTTGCACAGTACCTATTTGATTTGGAGAACACAAATCAGGAACTGAAAAGTGACTTAAAAGATCTCTACATAAACCAAGCAATTCAAATAGATGTGTCTGGGAATCGCAAGGCTGTAGTCATCTATGTGCCTTACAGATTGAGTAAGGCATTCCGCAAAATTCATCTTCGCCTTGTCAGAGAGTTGGAGAAGAAGTTCAGTGGGAAGGATGTTGTATTGATTGCCACAAGAAGGATCCTGCGGCCTCCAAAGAAAGGGTCTGCTGTTCAGCGACCTCGAACCCGCACTTTAACTGCTGTCCATGATGCTATGCTGGAGGATGTTGTGTATCCTGCAGAGATTGTTGGTAAAAGAGTCAGATATAGAATTGATGGATCAAAAATAATCAAGGTTTTCTTGGACCCCAAGGAACGCAATAATACTGAATACAAGCTGGAGACTTTCTCTAGAGTTTACAGGAAGCTTACCGGGAAAGATGTAGTTTTCGAGTATCCTATCACAGAAGCCTGA 576 0.4236 MYTSRKKIHKDKEVEPTEFEETVAQYLFDLENTNQELKSDLKDLYINQAIQIDVSGNRKAVVIYVPYRLSKAFRKIHLRLVRELEKKFSGKDVVLIATRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRYRIDGSKIIKVFLDPKERNNTEYKLETFSRVYRKLTGKDVVFEYPITEA. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00104 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca2g00104 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca2g00104 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca2g00104 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00104 Seca-Chr2 1733657 1735572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00104 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 81.152 3.86e-116 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00104 K02993 - gmx:100500684 358.221