Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00095 ATGCGGATGAGCTGTAACGGTTGCCGGGTACTCAGAAAAGGTTGCAGTGAGAATTGCAGCATAAGACCCTGTTTACAGTGGATCAAGAGCCCAGAATCCCAAGCCAATGCCACTGTCTTTCTAGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTTGTCAACGCCGGCCCCGAGCATCTCCGTCCAGCGATTTTTCGTTCATTGCTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCGGTCGGTTTGTTGTGGTCGGGGAGCTGGCAGCTTTGTCAAGCCGCCGTTGAAGCTGTCTTGAAAGGCGTGCCAATCACGCCGATCACATCTGAAGCCGCGGCTAATGGGCGGGGCCCACCACTCAAGGCCTACGACATACGCCACGTGTCCAAGGACGAGAACTCCGCCGCCGCGTCAAATGAAACTCACCAACGAGTCAAGACTCGGTCGCGTGTCAAGCGAACCGTCGCGGGCAAGCCAAAAGTATCCGCCAACGAGGAAAAAACTAAAAACAATAAGGGAACCGAATTAGGTTCGGCTGAACCGGATTCCGTACGGGATGCTGGAGTGGTTGCATGGACCGGGTGTTGCGCGACCGAAGAGGTGTTGAACCGGTCTGGGAGTCATGATCATGAGTCCTCGCTTAGCCACCAGTCCGAGGCGGCGAATGCGGTGGAAGGAGAGAGCAAAGAGAGCGAGAGCATGGTTTCGGTGGAGACCGCGGAAACTTCGATTCTCTTCCGAGATGAACCGGAGTCGAACCCAAAGCGAAGTGACCGAACCGATGAGAGTGGTGGGTATCATGTTGGTCTAGAGCTGACGCTTGGGCTTGAACCGCTCTCACGTGCGCATCACGTGGTTCCGGTGAAGAAGAGAAGGATTGAATTGTTGAAGGATTGTGATGGTTCGGCTGAGAATGGCTCATGCAAGATGGATCTGGGGCTTGCTTGA 963 0.5483 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGVPITPITSEAAANGRGPPLKAYDIRHVSKDENSAAASNETHQRVKTRSRVKRTVAGKPKVSANEEKTKNNKGTELGSAEPDSVRDAGVVAWTGCCATEEVLNRSGSHDHESSLSHQSEAANAVEGESKESESMVSVETAETSILFRDEPESNPKRSDRTDESGGYHVGLELTLGLEPLSRAHHVVPVKKRRIELLKDCDGSAENGSCKMDLGLA. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00095 320 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Seca2g00095 320 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 279 - -
Seca2g00095 320 MobiDBLite consensus disorder prediction 136 188 - -
Seca2g00095 320 MobiDBLite consensus disorder prediction 209 270 - -
Seca2g00095 320 MobiDBLite consensus disorder prediction 164 178 - -
Seca2g00095 320 PIRSF AS2 1 319 IPR017414 -
Seca2g00095 320 MobiDBLite consensus disorder prediction 249 270 - -
Seca2g00095 320 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00095 Seca-Chr2 1622663 1624182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00095 1 319 AS2 family AT3G02550 55.280 1.55e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca2g00095 LOB 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00095 - - lja:Lj1g3v3317390.1 472.626