Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00088 ATGAAGGTTAACGTGAAGACACTCAAGGGGACTCACTTTGAGATCGAAGTGAACCCACAAGACATGGTTGCTGATGTGAAGAAAAATATAGAAGTAGCGCAAGGTGCTGATGTTTACCCTGCTGCACAACAAATGCTTATTTATCAGGGGAAAGTTCTAAAGGATACTACAACCCTGGAAGAAAACAAAGTTGCTGAGAATAGTTTTATGGTGATCATGTTATCCAAGAATAAGACATCATCAAGTGGAGCCCCAGCTGCTTCATCTGCACCCCCAAACCCGGCGGCTCAACCTGCAAGTTCTTTGCCTCCTACTTCATCAACATCTCAACCTCCTTCTTCGACTTTAGGACAGGGAGAATCCAATTCTGAGCACAATCCTGTTACAACTCCTGCTGCTACGGTGCCTAGCATATATGGCCAAGCAGCATCAAATCTTATCGCAGGTAGTAATTTAGAATCAACTATTCAGCAGATTCTAGAAATGGGAGGAGGAAGTTGGGATAGGGATACTGTTATCCGTGCTCTTCTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTACCGGCAGTTGCCAGGTCCGCCGCAATTGGGCAGGCAGATAACCCTTCAGTCCAGGCTCCACAACCAGCTGTGCCTACTGGTGGGCCTAACACTAACCCACTCAACCTGTTTCCCCAGGGCATTCCCAATTTGGGTACAAATGAAAATGCAGGTGACTTGGATTTCTTGCGAAACAGTCAACAGTTCCAAGCCTTGA 795 0.4579 MKVNVKTLKGTHFEIEVNPQDMVADVKKNIEVAQGADVYPAAQQMLIYQGKVLKDTTTLEENKVAENSFMVIMLSKNKTSSSGAPAASSAPPNPAAQPASSLPPTSSTSQPPSSTLGQGESNSEHNPVTTPAATVPSIYGQAASNLIAGSNLESTIQQILEMGGGSWDRDTVIRALLLHLTILKELLNISILAFLNKLMYRQLPGPPQLGRQITLQSRLHNQLCLLVGLTLTHSTCFPRAFPIWVQMKMQVTWISCETVNSSKP. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00088 264 SMART ubq_7 1 75 IPR000626 GO:0005515
Seca2g00088 264 FunFam UV excision repair protein RAD23 homolog 145 178 - -
Seca2g00088 264 MobiDBLite consensus disorder prediction 100 132 - -
Seca2g00088 264 Gene3D - 1 80 - -
Seca2g00088 264 Gene3D - 145 179 - -
Seca2g00088 264 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 176 - -
Seca2g00088 264 MobiDBLite consensus disorder prediction 80 132 - -
Seca2g00088 264 FunFam UV excision repair protein RAD23 1 80 - -
Seca2g00088 264 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
Seca2g00088 264 CDD Ubl_Rad23 1 74 - -
Seca2g00088 264 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Seca2g00088 264 Pfam UBA/TS-N domain 152 176 IPR015940 -
Seca2g00088 264 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00088 Seca-Chr2 1531358 1538854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00088 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 5.22e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00088 K10839 - gmx:100817821 219.55