Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00072 ATGGAAGGCAATAATAGAGAAGAGATTGTGGATGTTGGATCAGTTGTAGAAGCTGGGATTACAAGATTTTTATTGACTTTAATTCCTCACTTTAGGAAGATTTTGTTGTCAGCTTTTGAATGTTCTCACTGTGGTGAGAGAAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCACGTGGTTGTTGTTACTCTCTGGAGATCCCATCAGGTGAACAAAAGATGCTCAATCGACAAGTGGTTAAATCAGAATCTGCTACCATTAAGATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTAATGCGGGCTGCTGATGAACTTCAGGCCCTTCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACTGCTGAAGCAATTGATCAGTTCTTGGTCAAATTGCGAGCCTGTGCAACAGGGGAATCGTCCTTCATGTTTATTCTTGATGATCCCGCAGGAAACAGCTTCATTGAAAACCAGTTCGCACCGTCATCTGATCCATACCTGACTATCAAGTTTTATGAGCGAACTCCTGAGCAGCAAACATCATTGGGATATCTTGTTGATTCTACACAAATTGAAGGAACTACTGATGAAGTACCAGAAGGGGGAGAAGCTGTGGCTGCTAATCAAATGAGGGGAGAACCACATGGGTCAGTAGGGGCAGCAGCTGGTCATCAAGCCATTGCACAGAGTAATAGTGCAGAAATTGCAGAAGCCTTGTTTCGATATACTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGGTTGTGCCAGTCCGTGCGAAACTCGAATGTTCGTCACCAGTATCTTTTTACCATTTTGCATATTGCCATTTAAATATGCTTTGCCTGTGTTTGTTACATTTATTTACGATTATCTATCATTTTAG 933 0.4277 MEGNNREEIVDVGSVVEAGITRFLLTLIPHFRKILLSAFECSHCGERNNEVQFAGEIQPRGCCYSLEIPSGEQKMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERRKVAPETAEAIDQFLVKLRACATGESSFMFILDDPAGNSFIENQFAPSSDPYLTIKFYERTPEQQTSLGYLVDSTQIEGTTDEVPEGGEAVAANQMRGEPHGSVGAAAGHQAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGGCASPCETRMFVTSIFLPFCILPFKYALPVFVTFIYDYLSF. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00072 310 Gene3D ZPR1, A/B domain 56 197 IPR042451 -
Seca2g00072 310 Gene3D ZPR1, zinc finger domain 16 55 IPR042452 -
Seca2g00072 310 Gene3D ZPR1, zinc finger domain 256 296 IPR042452 -
Seca2g00072 310 SMART zpr1 17 170 IPR004457 GO:0008270
Seca2g00072 310 NCBIfam ZPR1 zinc finger domain 28 194 IPR004457 GO:0008270
Seca2g00072 310 PANTHER ZINC FINGER PROTEIN ZPR1 17 284 IPR040141 -
Seca2g00072 310 FunFam zinc finger protein ZPR1 56 197 - -
Seca2g00072 310 Coils Coil 106 126 - -
Seca2g00072 310 Pfam ZPR1 zinc-finger domain 17 169 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00072 Seca-Chr2 1379753 1385276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00072 4 284 C2H2 Transcription Factor Family AT5G22480 66.885 1.34e-142 409