Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00071 ATGGCATCCACTTGTGATGCTTGTGGTTACCGTAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAAGGAAAAAGGATTACTCTAAGTGTGAAAAATGTTAATGACTTGAGTCGTGATGTAATAAAGTCTGATACTGCGAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGTACCCTGGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGTCTTGATGAACATAGAAGAAGCAAGTGGCTAGACTTCAAAGCAAGCCTAAAGAAGCTTCTTAGCCTGGAAGAAGCTTGGACTCTAACTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTCAAAGACGACAATCAATTAACATTTGAGGAATATGAGAGGTCATGGGAGCAAAATGAAGAATTAGGTCTGAATGATATGGATACCTCTTGTGCCGATGCTGCTTATGAATCAACAAATACTACTAAAATTGAGTGA 552 0.3967 MASTCDACGYRNSELKPGGRIPEKGKRITLSVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHRRSKWLDFKASLKKLLSLEEAWTLTLDDALANSFVAPATDDLKDDNQLTFEEYERSWEQNEELGLNDMDTSCADAAYESTNTTKIE. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00071 183 Gene3D ZPR1, A/B domain 20 162 IPR042451 -
Seca2g00071 183 FunFam Zinc finger protein ZPR1 20 162 - -
Seca2g00071 183 PANTHER ZINC FINGER PROTEIN ZPR1 1 177 IPR040141 -
Seca2g00071 183 NCBIfam ZPR1 zinc finger domain 3 166 IPR004457 GO:0008270
Seca2g00071 183 SMART zpr1 1 134 IPR004457 GO:0008270
Seca2g00071 183 Pfam ZPR1 zinc-finger domain 1 132 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00071 Seca-Chr2 1375552 1379017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00071 1 182 C2H2 Transcription Factor Family AT5G22480 78.022 5.85e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00071 K06874 - gmx:100798741 328.561