Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00051 ATGCCGGAGCTTCGTAGTGGACGCCAGCGTCGTCGTGGTGTTCCGGTAGGCCGTAGAAGCTCAGAACCACCGTCCCTGGCGGCAAAATACGTGAAAACCCGGGCTGCAGTAGCTGCAGCTAAGAAACTTGAGGAGGAGAAGGCTGTGATCGTAATATCAGAGCGTGATAGCGACATAAATAAGGAGAAGGAAGGCTTGATGGGTGACGAAAGTGGCGGTTTGAGTGCTAATAAGGGCCTTCCTCAAGAGGATGAGGGCAACACTGCCCCTTTTCCGGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAATTGGGTAAAGGTGGGTTTGGACAGGTTTTTGTTGGCCGCCGAGTTACTGGTGGTAATGACCGTATTGCTGGCCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCCTATGAGTGGCAAGTGTACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAGGGAGAATATTACGTAATGTTTATTTCTTTCTTTGTATATGTGCAGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTCGCATGTATTGCTGTTGAGTCATTGTCAATTCTGGAGAAGATGCACTCAAGAGGATATGTGCATGGCGATGTAAAACCAGAAAACTTCTTACTAGGCCAGCCAGGCACAGCACAAGAGAAGAAATTGTTTCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTCGAAGGGATGATCTTGAATCTCTTGCATATACACTTATTTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGTTATGCTGCTTCTGCCCTCCTCCTTTTAGGCAGTTTCTTGAGGTTGTAGTTAATATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATATCTCTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGCGACCAATTAACACCGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGAGCAGATTGAATACTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAACGTAGCGGATGCAAGATTAGCACAGCATGTGGAGAGAGGGGTTGCAGATGGTCTTCTTATTAGTTGTGTAGCTTCTTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTGTCTCCTTTCTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACCCAGTATACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACTTCAATGGCCACTGCTGGAAGTCGCTGGGGCGTTGTTATGTCTCGGAATGCTGGATTCAGTGATCAGGTCGTTGAACTTGATTTTCTCTACCCTAGTGAAGGCATCCACAGACGTTGGGATAGTGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATTTTAAGCATTCCAAGGCGCAGGCCTGGCGATGAAACTCAGGAAACCCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTATCTTGCTTGTCTGTGCTATGGGCGCACAGTATGCTGA 2025 0.4489 MPELRSGRQRRRGVPVGRRSSEPPSLAAKYVKTRAAVAAAKKLEEEKAVIVISERDSDINKEKEGLMGDESGGLSANKGLPQEDEGNTAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRIAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMFISFFVYVQVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEVVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRSRLNTEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGVADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC. 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00051 674 MobiDBLite consensus disorder prediction 398 426 - -
Seca2g00051 674 SUPERFAMILY Protein kinase-like (PK-like) 103 395 IPR011009 -
Seca2g00051 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Seca2g00051 674 PANTHER CASEIN KINASE-RELATED 103 636 - -
Seca2g00051 674 ProSiteProfiles Protein kinase domain profile. 103 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00051 674 MobiDBLite consensus disorder prediction 412 426 - -
Seca2g00051 674 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Seca2g00051 674 Gene3D Transferase(Phosphotransferase) domain 1 84 435 - -
Seca2g00051 674 FunFam casein kinase 1-like protein HD16 76 430 - -
Seca2g00051 674 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g00051 674 MobiDBLite consensus disorder prediction 59 95 - -
Seca2g00051 674 CDD STKc_CK1 103 387 - -
Seca2g00051 674 Pfam Protein kinase domain 103 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00051 674 SMART serkin_6 103 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00051 Seca-Chr2 799858 806845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00051 230 387 MAP Kinase Kinase Kinase AT5G50180 25.000 3.99e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca2g00051 Pkinase 1.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00051 - - gmx:100819969 1197.57