Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00050 ATGGCAGCATCAACATCTTGTGTTAGCAACAATCCATCCCCTATAAAAGAGACAAATTTGATCTCTCATTCATATCCTACACCTCTTGCAAGATATGAGGAAGTTGTAAGAAATCCAAAGTTGTTCATGTTCACATTGGAGAAGCTCCATGCTTCCATGGGTACCAAGTTCATGATTCCCATTATTGGAGGAAAAGAATTAGATTTGCATCGCCTCTTCGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATTAGGGAGAGAAGATGGAAAGAAGTAACTGCAGTTTTTAATTTTCCATCAACAGCCACAAATGCTTCTTTTGTGTTGCGGAAGTACTATTCTTCATTGCTTTACCACTATGAACAAATCTATTATTTTAGAGCCAATCATTGGACCCCTGCAACATCTGATGTCATGCAGAGTCACTCAACCATATCAGTTCCTGCCCAAAGAATACATTTTTTGCAGCCTTCCCTGGGAGTTCAACCATCTATCTTTCAACAATCAATAGATAATATTGCTGAATTGCACGAAGGATCTCGAGTAAATGGAGTCATTGATGGAAAGTTTGAAAGTGGGTATCTAATTTCTATTTCAATAGGTTCAGAGATTCTCAAAGGCGTGCTTTATGAAGCACCACAAATCCCGATATCGCCGACCTTTGCAACACATCAACAAAGCATTATGGCTAAGAGCAACAATGCCTTTACTGCTTTAGGTGTCCATCGTCGACATCGCAGGAAGAAATCAGAAATCAAAAGGAGAGATCCCGCTCATCCAAAACCCAATAGAAGTGGTTATAATTTCTTCTTTGCTGAGCAACATGCTAGACTAAAGCTACTAAATCAAGCAAAGGACAGAGATATTAGTAGGACAATTGGTGAACTCTGGAACAAGTTAAAAGAGCCTGAAAAATCAGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACAAGGCAGAAATGGAGAATTATCGCGAGAAATTGAAGACGTGCCATGTGATCAATGATGTTGTGCCACCACAACAACAACTTCCTGAAGTAGATACAACTTTGGTTGATGTGGACATAAAATTGCTTGGTTCTCCTCAAACTCCGGAGGAGAGCAGTTCTGGTGGGAGTGACTATGAAGATGATATCAATATGGATGCATCTCCTAGAGTAAAGGTGGGTATTGAAGCTACCTATATGGGTTCAAACAAGGCATCTGATGAGGGGGATTGTGAGCTTATTGGTCATTGCGAGAGAGAAAGGGATAATAGAGTTCAACTGGTTTAG 1287 0.4017 MAASTSCVSNNPSPIKETNLISHSYPTPLARYEEVVRNPKLFMFTLEKLHASMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKLIRERRWKEVTAVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRANHWTPATSDVMQSHSTISVPAQRIHFLQPSLGVQPSIFQQSIDNIAELHEGSRVNGVIDGKFESGYLISISIGSEILKGVLYEAPQIPISPTFATHQQSIMAKSNNAFTALGVHRRHRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRTIGELWNKLKEPEKSVYQEKALKDKERYKAEMENYREKLKTCHVINDVVPPQQQLPEVDTTLVDVDIKLLGSPQTPEESSSGGSDYEDDINMDASPRVKVGIEATYMGSNKASDEGDCELIGHCERERDNRVQLV. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00050 428 MobiDBLite consensus disorder prediction 245 268 - -
Seca2g00050 428 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 329 IPR009071 -
Seca2g00050 428 Gene3D High mobility group box domain 246 339 IPR036910 -
Seca2g00050 428 Pfam HMG (high mobility group) box 262 329 IPR009071 -
Seca2g00050 428 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Seca2g00050 428 Gene3D - 21 141 IPR036431 GO:0003677
Seca2g00050 428 Coils Coil 311 331 - -
Seca2g00050 428 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 358 - -
Seca2g00050 428 PRINTS High mobility group (HMG1/HMG2) protein signature 313 333 - -
Seca2g00050 428 PRINTS High mobility group (HMG1/HMG2) protein signature 294 313 - -
Seca2g00050 428 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Seca2g00050 428 MobiDBLite consensus disorder prediction 363 388 - -
Seca2g00050 428 SUPERFAMILY ARID-like 33 133 IPR036431 GO:0003677
Seca2g00050 428 SMART bright_3 37 128 IPR001606 GO:0003677
Seca2g00050 428 SMART ARID_2 33 123 - -
Seca2g00050 428 CDD HMG-box_AtHMGB9-like 262 328 - -
Seca2g00050 428 SMART hmgende2 261 330 IPR009071 -
Seca2g00050 428 FunFam High mobility group B protein 15 30 144 - -
Seca2g00050 428 SUPERFAMILY HMG-box 249 333 IPR036910 -
Seca2g00050 428 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00050 Seca-Chr2 762330 766674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00050 3 362 ARID Transcription Factor Family AT1G04880 56.614 7.58e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca2g00050 ARID 8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00050 - - gmx:100783284 536.569