Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00047 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGCAGAAGAGTATCAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGTGAGCCACTTCACTCTTTGGAAGAGAGACTTTGTGTATCAACTGAAAGAATTCAAACACACAGAACAAAGTCTGGTGCCTCACATCAGATTAGAAGTGAACTGTTAAAAAGTAAGACTCATAGGAAGCCAAGAAATGATGTTTGTATAGGAGACAAAACAGATGAACTATTGAAGAATGAGACTGAAAAGAAATCTTCTAGCAATACAAATTCAGGCAAAGGAATTGACAACAATTCATCAGAATACATGCCAAGGTATGAGGTGAGTGAGCGAGAAGATAGCAGAGTGTCTAATGCAAAAAGAGGCAAAGAAAAGTCATTCAAGGATGCAAAGGTGAGTAAGATGCATAGCAGAAGTTCCAGTATACATATGCTTAGACACTCTAGTGAACATGGAAAGAATATGAAACCTGAGGCTGAGGAGGAGTCATACACTAGAGTTGATAACAAAAGCTTTGAAGATATCAGAAATAAAAATAGTCATCATGCAATGCAAGAAGCTTCTAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAAACGTTTTCTAAAGGATGAGGATTTTCGGTCTACTTTGCGCCATAATTGTTTCTCCTCCTTGAATTTTATTCAGGTGGATGAAGAGAACAATACTGAGATCAAAGTCATTAGAAGTCTTGAGCAAGCAATTGAGACCATAGAACAACATGCTGAGGAACCTATATCTGCCTCATATCTGAAAAAAGCCATGATGCAACTTAGCATTATTACAGGTTTGAGTTTAAATGATCTCAAGTATGGTTGTACATGTGGGATCCCAAATTATAAGTTATCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAGAGAAAAAATAAAGTTTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCAAGGACAACATTGTTGCAAGAACTGTGGGAGCATCTATTTTCTCCACAATTTTCTCATTTGAAGGCATGGTACAACAAGGAAGCTGAAATTTTAATAGATACACCAAGTAAAACCAAAAGGCTAAAGCTTCTTCAAAAAATGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATATTACAAAGATTGGCTTACTGAAGGAGTAGAATCTCCAACTATTCCTTCTATTGGCATTCCATCAATATCTGTTACAGGAAGTCAACAGGGAAGTTCAATTGGTCATTCTTCAGAGTCTGCTAGCTCCACAGATCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTATATGATTCTGTCTTTGGTATCTCTAGTAAACCTGGAGTCTATGAAGCTGAAGATGATAAGGATGAAGATAGCCTAGAAGATTGTGTTAGAGGTTCTTATGGTTCAACTATTGTTAAACAAACATTAATATATGAGTCTGAAACTGTTAAATTTACTGATAAAGATACTGAAGATTTCACTCAAAGTGTACCAGTTGATGCATTCCATCCTCCAAATAAGACAAGCTCTACTCTTGAAGGATCATATTTTGAAAGCATTCCACAGGAATTTATTTGTCCACTTACTGGAAATATTTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAAAAGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACATGCCCAGTAACAGGAAATGCTTTAGAATGTATAGCCATGCCATTTACCAACCTTATTTTGAAGCGATTGATTGATAATTGGAAGTCTGAACGCTTTAATCATATTATGGATTTTGCTTCTCCATCAGTGGAAAATTCAAAGGAACTTAAGTTGAAAAAGAAGGATGAGGCTACTGTTTTCAAGTTAGAGGGTCTTCTGTCCTCTATGAAAGAAGAGGACAAATCAACATATGCTAAGCATCTGATATCTTTAGGAGTTCTTTCATTTCTTTTTAGGAGGTTTGAAGTGGGAAATATGGAAGAAAAATCACATGTGGTGGCACTCTTGCTAACTTTTATTCATGCAGACTCTGGTTGCATATTTCAGATAGCAAGAAATGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAAGAGGTTACCCCAATAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAGATGTATTTGATACAATGCATATTCTGCTCATGTATCTCAAGAATTCTTCTCCACTTGAAAAGCCCTTAACTGCTGTCCTTTTGTTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGTATATACAGGGAGGTGGCTGTGAAAGCCATTGCAGTGGCACTTCATGCCAGCTTAAATGATGAGAAAGCCCGAGAAAAGTGTTGCACAGCACTTCTAATCATGTGTGGCCATTTTTCTTCTATGGGAAAGATACTGACCAAGACTAGCATCTTGAAACAAGCAAGTTATAATAATGATAACTCAGAATTGAAACCTCCTAGACATGAAGAAGAGGGTCAACAATCAGATATAACCATTTCATCAGAAGATGAAGAAGAAAGGGGTGAAGAGTTGCAAATGATCTTGTTAGAATCGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGACCATATCAAGATGTTTAGATTCTAGGCACAAAGATTTGGTGAGGGCATGTCTAATAACTGTTATATGGTTGAGCTCCTCACTTTCTGTGCTATTTAATGCCGGATTGCATCTTCCTGCCTTCTTAGCCATCATCTTTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGATCCTTGCATCTATGTCCTTGCTTAACTTCAGTAAAATATCAGAATGCAGAACGGTTTTGAAGACTATGGCAGAAGATATTGCTCCACTTCTTTATGAACTTGTTGATGTAACATGGACTGCGAAGCAGCTGCATGCCATTCTGTCTAGGGAGAATCTGTAG 3084 0.3768 MASSLEELLAEEGFKGRRVSRSRSSFHYGASSEPLHSLEERLCVSTERIQTHRTKSGASHQIRSELLKSKTHRKPRNDVCIGDKTDELLKNETEKKSSSNTNSGKGIDNNSSEYMPRYEVSEREDSRVSNAKRGKEKSFKDAKVSKMHSRSSSIHMLRHSSEHGKNMKPEAEEESYTRVDNKSFEDIRNKNSHHAMQEASSLALDEVAVQAVVSILNGYIKRFLKDEDFRSTLRHNCFSSLNFIQVDEENNTEIKVIRSLEQAIETIEQHAEEPISASYLKKAMMQLSIITGLSLNDLKYGCTCGIPNYKLSACAHLYLSVVYMIQRKNKVSAKHLLQVFCDSPFQARTTLLQELWEHLFSPQFSHLKAWYNKEAEILIDTPSKTKRLKLLQKMYNEHLDSGTHIFAVYYKDWLTEGVESPTIPSIGIPSISVTGSQQGSSIGHSSESASSTDPFSPQPMVSKKLYDSVFGISSKPGVYEAEDDKDEDSLEDCVRGSYGSTIVKQTLIYESETVKFTDKDTEDFTQSVPVDAFHPPNKTSSTLEGSYFESIPQEFICPLTGNIFEEPVTLETGQTFERKAIKAWFEKGNRTCPVTGNALECIAMPFTNLILKRLIDNWKSERFNHIMDFASPSVENSKELKLKKKDEATVFKLEGLLSSMKEEDKSTYAKHLISLGVLSFLFRRFEVGNMEEKSHVVALLLTFIHADSGCIFQIARNVNRKCLLELLHSKEVTPITNAILFLTELLSMKRRKDVTSFISGLAGEDVFDTMHILLMYLKNSSPLEKPLTAVLLLHFDLLVEPQKFSIYREVAVKAIAVALHASLNDEKAREKCCTALLIMCGHFSSMGKILTKTSILKQASYNNDNSELKPPRHEEEGQQSDITISSEDEEERGEELQMILLESLIGDGESPFLKTISRCLDSRHKDLVRACLITVIWLSSSLSVLFNAGLHLPAFLAIIFQLKGILENGELELKILASMSLLNFSKISECRTVLKTMAEDIAPLLYELVDVTWTAKQLHAILSRENL. 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00047 1027 MobiDBLite consensus disorder prediction 863 890 - -
Seca2g00047 1027 MobiDBLite consensus disorder prediction 434 457 - -
Seca2g00047 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 628 IPR013083 -
Seca2g00047 1027 SMART Ubox_2 554 618 IPR003613 GO:0004842|GO:0016567
Seca2g00047 1027 MobiDBLite consensus disorder prediction 155 179 - -
Seca2g00047 1027 Pfam U-box domain 551 622 IPR003613 GO:0004842|GO:0016567
Seca2g00047 1027 PANTHER OS04G0584500 PROTEIN 539 1025 - -
Seca2g00047 1027 MobiDBLite consensus disorder prediction 117 148 - -
Seca2g00047 1027 SUPERFAMILY RING/U-box 544 624 - -
Seca2g00047 1027 MobiDBLite consensus disorder prediction 49 64 - -
Seca2g00047 1027 MobiDBLite consensus disorder prediction 95 116 - -
Seca2g00047 1027 CDD RING-Ubox_PUB 552 600 IPR045210 -
Seca2g00047 1027 SUPERFAMILY ARM repeat 665 993 IPR016024 -
Seca2g00047 1027 MobiDBLite consensus disorder prediction 49 179 - -
Seca2g00047 1027 MobiDBLite consensus disorder prediction 65 94 - -
Seca2g00047 1027 ProSiteProfiles U-box domain profile. 550 625 IPR003613 GO:0004842|GO:0016567
Seca2g00047 1027 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00047 Seca-Chr2 723308 729866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00047 551 667 U-box Gene Family AT5G42340 37.607 4.60e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00047 - - lja:Lj1g3v3329610.1 1507.66