Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00035 ATGGATAAGATCAATTTTGTGAAGAATGGGGAGCTTAGATTGCCTCCTGGATTCCGTTTCCACCCAACTGATGAGGAACTTGTTGTTCAATACTTGAAGCGTAAGGCCTTCTCTTGCCCTCTCCCTGCCTCTATCATTCCTGAGGTTGATGTTTGCAAGTTGGATCCTTGGGATTTGCCAGGTGTGGTGGGTTTAGGTGATTTGGAGCAAGAAAGGTACTTTTTCAGCACCAAAGAGGCCAAATATCCTAATGGGAACCGATCCAACAGAGCTACCAATTCAGGTTACTGGAAGGCAACTGGGTTGGACAAACAAATTGTAACTTCTAAAGGGAACCAAGTTGTGGGGATGAAGAAGACTCTGGTTTTCTACAGAGGAAAGCCACCTCATGGATCAAGAACTGATTGGATCATGCACGAATATCGCCTCCACAACACTTCCTCTCAGACTCAGGTGAGGATTGCTATTGGATTTAACAATTTAACAATCAATACCGTTGTGCAGAAGCAGAGCCATGTGGAAAATTGGGTTCTATGTCGCATATTTTTGAAGAGGAGAGGCAGTGCTAAAAGTGGGGGTGAAGGCATAGAAAGCATAGATAACATTAGCCACAACAAGGTGAGAAACTCTAGGGTGGTTTTCTATGACTTCTTGGCACAGAACAAGACTTCTTCCTCATCCAGTGGCAGTGGAATCACAGAGCTTTCCACCAATGAATCTGATGAACATGAAGAACAGAGCAGTACCTCAAATACTAATAGCAATACTAATACCAAGACCCTCCCTTATTTTAGAAGAAAAACTTAA 807 0.4312 MDKINFVKNGELRLPPGFRFHPTDEELVVQYLKRKAFSCPLPASIIPEVDVCKLDPWDLPGVVGLGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLHNTSSQTQVRIAIGFNNLTINTVVQKQSHVENWVLCRIFLKRRGSAKSGGEGIESIDNISHNKVRNSRVVFYDFLAQNKTSSSSSGSGITELSTNESDEHEEQSSTSNTNSNTNTKTLPYFRRKT. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00035 268 Pfam No apical meristem (NAM) protein 15 143 IPR003441 GO:0003677|GO:0006355
Seca2g00035 268 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 245 - -
Seca2g00035 268 ProSiteProfiles NAC domain profile. 14 184 IPR003441 GO:0003677|GO:0006355
Seca2g00035 268 Gene3D NAC domain 23 188 IPR036093 GO:0003677|GO:0006355
Seca2g00035 268 MobiDBLite consensus disorder prediction 222 268 - -
Seca2g00035 268 MobiDBLite consensus disorder prediction 222 236 - -
Seca2g00035 268 MobiDBLite consensus disorder prediction 247 262 - -
Seca2g00035 268 SUPERFAMILY NAC domain 10 184 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00035 Seca-Chr2 600515 602125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00035 1 224 NAC Transcription Factor Family AT5G13180 56.485 1.69e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g00035 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00035 - - gmx:100170709 341.658