Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00019 ATGGGTATTTGGGATTACAAATTCTTACTTGGGGTTTCCTCTATCTTCTGGTTGGTATGGGTTTCATCTGGGGAGGTTCCTGATGACAACATTCTAATAGATTGTGGATCCCCCAACAATACTAAGGTGGGGGATCGCTTATTTCAATCTGATAATTCTTCTTCCCACTTGCTTTCAACCTCAGAGTTTATTTTGGCAAAGGCAAACTTCACCCCAATTCCATCATCTTTTGATTCAGACCTGTACCAGACTGCTCTAATCCTTAAAAGTATTTCTCAATACACATTCCGAATCAAAAAACATGGAAGGCACTGGATTCGCTTGTATTTCTTCCCTTTCAGTTTTGGAAATTATAATATGAGCACTGCAAAATTCTCTGTTTCTGCTCAAAGCTTCACACTGCTCAAAGACTCTCAAATAGACAGTGGTTCTTCACTGAAAGAATACTCTTTGAACATAACTGATAGCCAGCTGGTACTCACTTTTACCCCTTCTCATAGTTCATTTGCCTTTATAAATGCCATAGAAGTTTTATCCATCTCTGACAAGGTCATTCCTGAGCATGTTAGCATTATGAGCCTACATGGGGTTGAAAAGGTTCTGTGGTTGAAGGCATTGGAGACTGTTGCCAGGGTGAATATGGGTAATCAATCAGTGTCTCCCCTTAATGATACTTTGGGGCGTCTATGGGTCTCAGATGATAAATATCTTATACACAATAATCTTGTTGATTTCGTATTCAAAACTGCACCAGTCAATTTCAAAGAAACACATATTACTGAAGATATTGCTCCATCTAAGGTGTACAGGACTGCTACTAGATTGAGGACAGGTTCAGATCCCAGAACAAATGCTAATGTGACATGGCTTTTTGATGTTGATCCCGGCTTTGATTATCTTGTTCGCTTTCATTACTGTGACATTGTGAACCTACCCCCAAACACTCTCTTCAACGTTTATGTTAACTCTTGGCTTGTTTCTACAATCGATCTTGGCAAAGAAACATCAAATAAATATGGTGCGCCATATTATATGGATGTCATCACTAGTACTACTGGCAGCAGCCGTAGTTTAAATGTTAGTGTTGGTACTTTTAGTATAAGTGAAGCATCTTCACCAGAGGCCATTCTCAATGGGTTGGAAATCATGAAAATCAGTAACTCCAAAGATAGCCTGGTCTTGGTCTTGGATTCAGAGACAAGTGCCAAGACAAAAGTTGGTATGATAGTGGGTTTAGTGACTGGAGCTGTGGTTGGTTTTTTGGCTATGGTTATGGGTTTACTTCTTCTGCTTTGCAGAAGAAGAAGAAGAAGAAACAGTCTCCACACTGGTTTTGCTATTAGCAAAGAGGCTAGTAACAATTATGATGGAGCTGCGATTTTTTCAAGGTCAAAAATTGGGTATCGGTTGCCTCTTACAGTAATTCAAGAGGCAACTAATAATTTCAGTGAGGATTTGGTCATTGGTGCTGGTGGTTTTGGGAAGGTTTACAAGGGAGTTTTGAAAGATGAAACAAAGGTAGCTGTGAAAAGAGGGTCATGCCAATCACAACAAGGTCTTGCTGAGTTTCGGACTGAAATTGAGATGTTATCGCAGTTTCGCCATCGCCATTTAGTATCATTGATTGGGTACTGTAATGAACAAAATGAGAGGATCATTATTTACGAGTACATGGAAAAAGGGAGTCTGAAGAACCATCTGTTCGGATCAGATGCATATGCAACCTGCTTAAGTTGGAGGCAGAGGCTTGAGATTTGCATAGGAGCAGCCAGAGGACTACATTATCTTCACACCGGCTCTGCCAAGGCAATTATTCACCGTGATGTTAAATCGGCAAATATCCTGCTAGATGAAAACTTGATGGCTAAAGTTGCTGATTTTGGTCTTTCAAAGACTGGTCCAGAGATTGATAAGAGACATGTCAGTACAGCAGTGAAAGGAAGCTTTGGCTATCTTGATCCAGAATACTTAATAATGCAGCAGTTGACAGAAAAATCAGATGTTTACTCTTTTGGGGTGGTCATGTTTGAAGTCCTTTGTGGGAGACCAGTAATTGATCCATCACTCCCAAGGGAAAAGGTGAATCTAGTGGAATGGATAATGAAATGGCAGGAAAGAGGCACGATGGAGGAAATTGTAGATCATCGCCTTGCAGTTGCAGCTCAGATAAAGTCAGAATCACTTCACATATTCCTAGAGATTGCCACAAAGTGCTTGGCAGAACATGGCATCAACCGGCCTAGCATGGGAGAGGTGTTGTGGCACCTGGAATGTGCTTTGCGACTAGAAGGTGTTGATGAGAGATCCAATCATCGTGGTGGTGATGCGTCCTCCCAAATGTATCGCTCAGATACTGGATTATCTTCAATAGAATACAGTATGGGAAGCGTAGATGACCTATCTGGTGTTTCAATGAGCAAGGTGTTTGCTCAAATGGTGACAGAGGATAAGCAGTAG 2457 0.4103 MGIWDYKFLLGVSSIFWLVWVSSGEVPDDNILIDCGSPNNTKVGDRLFQSDNSSSHLLSTSEFILAKANFTPIPSSFDSDLYQTALILKSISQYTFRIKKHGRHWIRLYFFPFSFGNYNMSTAKFSVSAQSFTLLKDSQIDSGSSLKEYSLNITDSQLVLTFTPSHSSFAFINAIEVLSISDKVIPEHVSIMSLHGVEKVLWLKALETVARVNMGNQSVSPLNDTLGRLWVSDDKYLIHNNLVDFVFKTAPVNFKETHITEDIAPSKVYRTATRLRTGSDPRTNANVTWLFDVDPGFDYLVRFHYCDIVNLPPNTLFNVYVNSWLVSTIDLGKETSNKYGAPYYMDVITSTTGSSRSLNVSVGTFSISEASSPEAILNGLEIMKISNSKDSLVLVLDSETSAKTKVGMIVGLVTGAVVGFLAMVMGLLLLLCRRRRRRNSLHTGFAISKEASNNYDGAAIFSRSKIGYRLPLTVIQEATNNFSEDLVIGAGGFGKVYKGVLKDETKVAVKRGSCQSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCNEQNERIIIYEYMEKGSLKNHLFGSDAYATCLSWRQRLEICIGAARGLHYLHTGSAKAIIHRDVKSANILLDENLMAKVADFGLSKTGPEIDKRHVSTAVKGSFGYLDPEYLIMQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLVEWIMKWQERGTMEEIVDHRLAVAAQIKSESLHIFLEIATKCLAEHGINRPSMGEVLWHLECALRLEGVDERSNHRGGDASSQMYRSDTGLSSIEYSMGSVDDLSGVSMSKVFAQMVTEDKQ. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00019 818 Pfam Protein tyrosine and serine/threonine kinase 487 753 IPR001245 GO:0004672|GO:0006468
Seca2g00019 818 CDD STKc_IRAK 488 757 - -
Seca2g00019 818 SMART serkin_6 482 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00019 818 SUPERFAMILY Protein kinase-like (PK-like) 460 757 IPR011009 -
Seca2g00019 818 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Seca2g00019 818 FunFam Receptor-like protein kinase FERONIA 205 387 - -
Seca2g00019 818 FunFam Putative receptor-like protein kinase 30 181 - -
Seca2g00019 818 FunFam receptor-like protein kinase FERONIA 446 557 - -
Seca2g00019 818 Gene3D - 204 387 - -
Seca2g00019 818 Gene3D - 30 181 - -
Seca2g00019 818 Gene3D Phosphorylase Kinase; domain 1 443 557 - -
Seca2g00019 818 PANTHER OS07G0166700 PROTEIN 469 762 IPR045272 GO:0004714|GO:0006468
Seca2g00019 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Seca2g00019 818 Gene3D Transferase(Phosphotransferase) domain 1 558 776 - -
Seca2g00019 818 ProSiteProfiles Protein kinase domain profile. 482 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g00019 818 FunFam Receptor-like protein kinase FERONIA 558 778 - -
Seca2g00019 818 Pfam Malectin-like domain 33 385 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00019 Seca-Chr2 412863 415319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00019 1 816 Receptor kinase-like Gene Family AT3G46290 50.415 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca2g00019 Malectin_like 1.3e-29 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00019 - - lang:109328391 1189.1