Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06147 ATGTCTGGGGAGGCAGATCGGATGAGCACAGAGGAACAGATGGACACAGCAAAAGAGACGGCAGAGAAGCTCAAAGAGCGAAAGGTATCATGGGCAAAGCTACGCCGTGTAGACTCTCTCAATTTGGAAGCTGGGAGAGTTTCTATGATTGCAAACCACGCTTCCAAGATGGGTTGGAGAACGACACTGAGCTTAGCATTTCAAAGTATAGGGATTGTATATGGTGATATTGGTACATCTCCACTTTATGTGTATGCCAGTACTTTCACCGATCAAATCAAACACAAAGATGACATTCTTGGCGTCTTGTCTCTCATCATCTATACAATTGTGCTCATACCCATGCTTAAATATGTCTTCATCGTCTTATGGGCTAACGACAATGGCAACGGTGGAGCGTTTGCACTGTATTCGTTGATATGTAGGCATATAAAAGTGAGTTTGATTCCAAATCAACAACCAGAGGACAGGGAGCTTTCGAACTACAAACTGGAAACACCATCTAGCCAGCTGAAGCGAGCCCAGAAACTAAAACAGAAGCTTGAGAACAGTCATTTTGCGCGGATTCTGCTAATACTTCTAGCTATAATGGGAACTTCTATGGTCATTGGAGATGGGATTCTTACTCCATCAATTTCAGTCCTTTCTGCGGTGAGCGGAATCAGTACATCACTAGGTCAAGATGCTGTTGTAGGCATCACTATAGCGATCTTAATCGTCCTATTTTCTGTGCAACGATTTGGCACCGATAAAGTGGGAGCCTCCTTCGCTCCAATTGTTTTAACGTGGTTTTCATTCATCGGTGGTATTGGTCTCTATAATTTATTCAAATATGACATTGGAGTGTTACGCGCTTTTAATCCAAAATATATATTTGATTACTTCAAACGGAACGGTAAGCAAGGATGGATATCCCTTGGTGGAGTCTTTCTATGCATCACAGGATCTGAGGCCATGTTTGCTGATTTGGGTCACTTCAATGTACGGGCCATTCAAATTAGCTTTTCTTTCATCACATGTCCTGCAATATTGGCTGCATACAGTGGGCAAGCAGCATTTCTACGGAAGTTCCCTGAGAAAGTGGGGAATACATTCTATGACAGTATACCGAAACCGTTATATTGGCCAACATTCGTTGTGGCTGTTGGGGCTGCCATTATAGCGAGCCAGGCAATGATTTCAGGAGCATTTTCCATTATATCCCAGGCCCTGAGTCTAGGTTGTTTCCCAAGAGTTAAGGTTGTTCATACTTCCACCAAGCACCATGGTCAGGTGTATATTCCCGAGGTCAACTACATGTTCATGATTGCATGTATTGTTGTCTGTGCTGGCTTCAAGACCACAGAGAAGATTAGCCATGCCTATGGTACGTATAATTAA 1380 0.4319 MSGEADRMSTEEQMDTAKETAEKLKERKVSWAKLRRVDSLNLEAGRVSMIANHASKMGWRTTLSLAFQSIGIVYGDIGTSPLYVYASTFTDQIKHKDDILGVLSLIIYTIVLIPMLKYVFIVLWANDNGNGGAFALYSLICRHIKVSLIPNQQPEDRELSNYKLETPSSQLKRAQKLKQKLENSHFARILLILLAIMGTSMVIGDGILTPSISVLSAVSGISTSLGQDAVVGITIAILIVLFSVQRFGTDKVGASFAPIVLTWFSFIGGIGLYNLFKYDIGVLRAFNPKYIFDYFKRNGKQGWISLGGVFLCITGSEAMFADLGHFNVRAIQISFSFITCPAILAAYSGQAAFLRKFPEKVGNTFYDSIPKPLYWPTFVVAVGAAIIASQAMISGAFSIISQALSLGCFPRVKVVHTSTKHHGQVYIPEVNYMFMIACIVVCAGFKTTEKISHAYGTYN. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06147 459 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 56 457 IPR003855 GO:0015079|GO:0016020|GO:0071805
Seca1g06147 459 Pfam K+ potassium transporter 66 457 IPR003855 GO:0015079|GO:0016020|GO:0071805
Seca1g06147 459 NCBIfam potassium uptake protein 65 456 IPR003855 GO:0015079|GO:0016020|GO:0071805
Seca1g06147 459 Coils Coil 7 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06147 Seca-Chr1 164684910 164694015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06147 1 456 Inorganic Solute Cotransporters AT4G13420 69.518 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06147 K03549 - gmx:100814313 798.119