Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06143 ATGGCCAACGAAGAAGAGAAAGGCAATGACTTGTATGAGGTTCTGGGGCTGAACAAGGAGTGCTCCGGATCAGAGCTTAGGAATGCTTACAAAAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGTCCGTCGTGGAAGAAGCTAAGAACAAATTCCAGGCAATCCAGCAAGCCTATTCTGTTTTATCTGATGCCAACAAAAGGTTCCTGTACGACGTAGGAGTCTATGACAGCGATGATGACCAAAACGGCATGGGTGACTTCATGAACGAAATGGCAACAATGATGAGCCAAACAAAACCCAATGAAAATGGGGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTAAAGAAATATTTCAAGCGGATAACGGGAGCACCTCTCATACTGCTTGTTCTGCTTCATCTACATACGTGACTTGCAGTGAAAGTTCTAATAATTCAAATAAACGCAATTCCACTGAGATGAATTTTGGGAAGCCAGATGATACTCCTCACTTCTATTCCAGCTACCAGAACTTCTGTTTAGGGACAGGTGGAGCAGCTCCAAGATACCAAGAAGGGAAAGGGAGTATGAGGAGGAGGTAG 594 0.4461 MANEEEKGNDLYEVLGLNKECSGSELRNAYKKLALKWHPDRCSASVVEEAKNKFQAIQQAYSVLSDANKRFLYDVGVYDSDDDQNGMGDFMNEMATMMSQTKPNENGEESFEELQQLFKEIFQADNGSTSHTACSASSTYVTCSESSNNSNKRNSTEMNFGKPDDTPHFYSSYQNFCLGTGGAAPRYQEGKGSMRRR. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06143 197 PANTHER PUTATIVE, EXPRESSED-RELATED 1 167 - -
Seca1g06143 197 SUPERFAMILY Chaperone J-domain 9 89 IPR036869 -
Seca1g06143 197 CDD DnaJ 10 66 IPR001623 -
Seca1g06143 197 SMART dnaj_3 9 69 IPR001623 -
Seca1g06143 197 Coils Coil 47 67 - -
Seca1g06143 197 MobiDBLite consensus disorder prediction 144 166 - -
Seca1g06143 197 Pfam DnaJ domain 10 74 IPR001623 -
Seca1g06143 197 ProSiteProfiles dnaJ domain profile. 10 77 IPR001623 -
Seca1g06143 197 MobiDBLite consensus disorder prediction 144 161 - -
Seca1g06143 197 Gene3D DnaJ domain 7 134 IPR036869 -
Seca1g06143 197 PRINTS DnaJ domain signature 30 45 IPR001623 -
Seca1g06143 197 PRINTS DnaJ domain signature 49 69 IPR001623 -
Seca1g06143 197 PRINTS DnaJ domain signature 12 30 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06143 Seca-Chr1 164653596 164656951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06143 12 74 C2H2 Transcription Factor Family AT1G74250 48.485 4.20e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06143 - - lja:Lj3g3v2576120.1 278.485