Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06134 ATGTGGTGGAGATCAGCATCATTCATCTTGGACAGACAGCAACAGAACGACAGGCCCGATTCGTCGCTGTCCATCACTCCCCCTCCGCTTGAAACTGAATCCTCAATGGGCGAAAACCCTAACCCTAAGATTTCGGCTTACTATCAGACGAGAGCAGCGCATCATGGTGTGGTGACCAGCGACTGGCTGGCTCAGGCTCAAGCTGCCATTGGCCAGGACTCTGAACCTGAACCTCAGCCACAAGTTAGGGTCGATCCCGATAAACCCTTCAGCGTCATAGATGAATTTAATAACTGGCGAAAACAGCCCCATTTGGCCGAGGCCGTCGCCGCTATTCGCGCCTTGGCCGCCGTCATCATGTCCAGCCAGGCTTCCACCATGATGCAACTCGAAATTGAGCTCAAGAACGCCTCCGATTCTCTCAAATCCTGGGATACAACCTCTATCTCTTTGACAGCAGGCTGTGATCTGTTTATGCGATATGTCACTAGGACCGCTGCTTTAGAATATGAAGACTTCAATTCTGCAAAGTCTCGCCTAATTGAACGTGCCGAGAAGTTTGGGGAAATCTCCTACAAGGCAAGGGACTTGCTCACTGCTCGGAAAATTATTGCAATGTTGAGTCAAGAATTTATATTTGATGGTTGTACAATTTTGGTTCATGGTTATTCCAGAGTTGTCTTTGAAGTTCTAAAACTGGCAGCACAAAATAAGAAACTGTTTCGCATCTTCTGCACAGAGGGAAGACCAGACCGAACGGGATTACGGTTGTCCAATGAACTGGCCAAGCTTGATGTTCCGGTTAAACTTTTAATAGACTCCGCAGTTGCATATTCTATGGATGAGGTGGACATGGTTTTTGTGGGTGCAGATGGAGTTGTCGAAAGTGGGGGCATAATTAACATGATGGGGACATACCAAATTGCATTGGTTGCACATAGTATGAATAAACCAGTTTATGTCGCTGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCCCTTGACCAAAAGGATCTGGCCCCTGCCTTACGCCCTATTGATTTTGGGGTACCCATTCCATCGAAGGTAGAGGTTGAAAGGTCTGCGCGGGACTACACCCCTCCTCAGTATCTGACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCTGTTGTTAGTGATGAGCTGATCCAGCTATATTTATAG 1188 0.4722 MWWRSASFILDRQQQNDRPDSSLSITPPPLETESSMGENPNPKISAYYQTRAAHHGVVTSDWLAQAQAAIGQDSEPEPQPQVRVDPDKPFSVIDEFNNWRKQPHLAEAVAAIRALAAVIMSSQASTMMQLEIELKNASDSLKSWDTTSISLTAGCDLFMRYVTRTAALEYEDFNSAKSRLIERAEKFGEISYKARDLLTARKIIAMLSQEFIFDGCTILVHGYSRVVFEVLKLAAQNKKLFRIFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06134 395 SUPERFAMILY NagB/RpiA/CoA transferase-like 104 394 IPR037171 -
Seca1g06134 395 Coils Coil 127 147 - -
Seca1g06134 395 Gene3D - 199 395 IPR042529 -
Seca1g06134 395 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 54 395 - -
Seca1g06134 395 FunFam Translation initiation factor eIF-2B subunit alpha 199 395 - -
Seca1g06134 395 Gene3D - 89 190 IPR042528 -
Seca1g06134 395 Pfam Initiation factor 2 subunit family 104 383 IPR000649 GO:0044237
Seca1g06134 395 FunFam Translation initiation factor eIF-2B subunit alpha 88 190 - -
Seca1g06134 395 MobiDBLite consensus disorder prediction 9 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06134 Seca-Chr1 164619310 164622509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06134 1 395 Eukaryotic Initiation Factors Gene Family AT1G53880 77.916 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06134 K03239 - gmx:100808764 655.981