Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06129 ATGACCAAGATCAAACAAGCCTCCAATAATAAGAAGAAGCTGATCTTCTTCTCTCTCTTTGCTACTTTGCTACTTTGCAACAATGTGGAGTCCTCCTCCCCATCCCATGTCATCATAAAAAACGCTTGCAGCAGCACATTGTATCCAGAATTGTGCATCTCAACAATAGCCTCTGAACCTGGACTTGCCCAGAAAGTTTCCAGCCACAAAGATGTGATAGAGTTGTACTTGAACGTAACCACCGGAATTGTTCAGCGCAATTACTTCACCGTAGGGAAGCTCTTAACCCGAAAGGGCCCCACCCTCACCAAGAGGCAGAAAACCGCCCTCCATGATTGCTTGGAAACCATTGATGAGACCCTCTATGAGCTAGGAAAGGCCAAGGATGACCTCAGAGATTACCCAACGAAAAAGTCTCTGTCTCAGCACGCGAATGATCTCATAACTCTGATGAGTTCCGCCATAACATACCAAGATACTTGCTTGGATGGTTTCTCTCATGATGAGGCTGATAGAAAGCTCAGGAAATATCTGGAGGAAGGGGAACTGCATGTGGAACACTTGTGCAGCAACGCATTGGTTATGATCAAGAACCTCACCGACACTGACATAGCTAATTCCCAGAACAACAGGAAACGACTGATGGAGCAGGAGGAGGATGGGATCAAGTGGCCCGAGTGGATTTCCGCCGCGGACAGGCGCCTTCTACAGGCGGCTGCGGTGACTCCTGACGTGGTGGTGGCGGCGGACGGCAGCGGGAACTTCAAGACAGTGTCAGCCGCGGTGGCTGCAGCTCCAGAGAAGAGTAGCAAGAGATATATAATAAAGATAAAAGCAGGGGTATACAGAGAGAATGTGGATGTGCCAAAGACAAAGACGAATATCATGTTTGTGGGTGATGGCAGAACCAACACTATCATCACAGCAAGTAGAAATGTTGTCGATGGCAGCACAACCTTCAACTCTGCCACAGTGGCCGTAGTGGGAGAACGATTCTTGGCACGAGACATAGGTTTCCAAAACACAGCAGGTCCCTCAAAGCACCAAGCAGTGGCCCTTCGAGTTGGTGCTGACCTCTCTGCCTTCTATTTGTGTGACTTCCTTGCATACCAAGACACCCTTTATGTCCACAGCAATCGCCAATTCTTTGTCAAGTGCTTCATTGCAGGCACTGTCGACTTCATCTTTGGCAATTCAGCTGTTGTGTTCCAAGACTGTGACATCCACGCCAGGCGTCCCAATTCAGGACAAAAGAACATGGTGACCGCACAAGGCCGTGTTGACCCTAACCAAAACACAGGCATTGTGATCCAAAAATGTAGGATTGGTGCCACCAAGGATTTGGAAGCCGTCAAGAGCAGCTTCCCTACGTTTCTTGGGAGGCCATGGAAGGAGTACTCTAGGACTGTCATCATGCAATCAACCATAAGTGATGTCATTGACCCTGCTGGCTGGCATGAGTGGAATGGCAATTTTGCTTTGAATACCTTGTTTTATGGAGAGTATCAGAACACTGGTGCTGGTGCTGCCACCTCTGGAAGGGTTAAATGGAAAGCTGCTAAGGGAAGAGGATTCATTGCGAAGGACATAGGGTTTGTGAATAGTGCAGGCGCAGAGAAGGAGCAGGCGGTGGCTTTGCTATCTACCTCGGATGAATCGGTGTTCTTGAGGTGCTCATTTGATGGTTTCCAGGATACTCTGTATGCCCATTCCAACAGGCAATTCTACAGTGAGTGTGACATAAAAGGCACCATAGACTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAATTGCAAAATTATGGCCAAGGAACCTTTAGCAAAGCAGTACAACACAATCACAGCTCAGGGCAAGCAGGACCCCAACCAGAACACTGGAATTGTAATCCACAAATCCTCAATCTCAGCACTGGACAATGAAAATCTTCAGGCTCCTACATACCTTGGTAGGCCTTGGAAAAATTACTCCACCACTGTTGTTATGCAATCTGATATTGGGTCATTATTGAACCCAATGGGGTGGATAAGCTGGGACCCCACTGTTGACCCTCCAAATACCATATTTTATGCTGAATACCAAAACACCGGACCAGGATCAAACACTTCAGAGAGGGTTAAATGGAGTGGTTATAAGCCCGCTCTTACAAAAGATGAGGCAGACAAGTTCACCGTCCAAACCTTTATCCAAGGCCCAAGGTGGTTGCCGAATGCTTCACTGAACTTTCAGCCCACCTTGTAA 2241 0.477 MTKIKQASNNKKKLIFFSLFATLLLCNNVESSSPSHVIIKNACSSTLYPELCISTIASEPGLAQKVSSHKDVIELYLNVTTGIVQRNYFTVGKLLTRKGPTLTKRQKTALHDCLETIDETLYELGKAKDDLRDYPTKKSLSQHANDLITLMSSAITYQDTCLDGFSHDEADRKLRKYLEEGELHVEHLCSNALVMIKNLTDTDIANSQNNRKRLMEQEEDGIKWPEWISAADRRLLQAAAVTPDVVVAADGSGNFKTVSAAVAAAPEKSSKRYIIKIKAGVYRENVDVPKTKTNIMFVGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDIGFQNTAGPSKHQAVALRVGADLSAFYLCDFLAYQDTLYVHSNRQFFVKCFIAGTVDFIFGNSAVVFQDCDIHARRPNSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKSSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWNGNFALNTLFYGEYQNTGAGAATSGRVKWKAAKGRGFIAKDIGFVNSAGAEKEQAVALLSTSDESVFLRCSFDGFQDTLYAHSNRQFYSECDIKGTIDFIFGNAAVVFQNCKIMAKEPLAKQYNTITAQGKQDPNQNTGIVIHKSSISALDNENLQAPTYLGRPWKNYSTTVVMQSDIGSLLNPMGWISWDPTVDPPNTIFYAEYQNTGPGSNTSERVKWSGYKPALTKDEADKFTVQTFIQGPRWLPNASLNFQPTL. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06129 746 Pfam Plant invertase/pectin methylesterase inhibitor 39 195 IPR006501 GO:0004857
Seca1g06129 746 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 200 IPR035513 -
Seca1g06129 746 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Seca1g06129 746 SUPERFAMILY Pectin lyase-like 239 518 IPR011050 -
Seca1g06129 746 SMART PMEI_2 34 195 IPR006501 GO:0004857
Seca1g06129 746 Coils Coil 746 746 - -
Seca1g06129 746 Gene3D - 238 520 IPR012334 -
Seca1g06129 746 Gene3D - 521 746 IPR012334 -
Seca1g06129 746 NCBIfam pectinesterase inhibitor domain 17 200 IPR006501 GO:0004857
Seca1g06129 746 ProSitePatterns Pectinesterase signature 2. 581 590 IPR033131 -
Seca1g06129 746 Pfam Pectinesterase 244 521 IPR000070 GO:0030599|GO:0042545
Seca1g06129 746 CDD PMEI-like_3 42 200 - -
Seca1g06129 746 FunFam Pectinesterase 520 746 - -
Seca1g06129 746 SUPERFAMILY Pectin lyase-like 521 743 IPR011050 -
Seca1g06129 746 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 201 IPR035513 -
Seca1g06129 746 FunFam Pectinesterase 238 519 - -
Seca1g06129 746 FunFam Pectinesterase 35 200 - -
Seca1g06129 746 PANTHER PECTINESTERASE 26 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06129 Seca-Chr1 164596812 164602973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06129 519 746 Carbohydrate Esterase AT3G14310 52.361 3.56e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06129 K01051 - pvy:116110447 759.214