Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06128 ATGGTGGTGGATGAAGAGGAGGATGGAATCAAGTGGCCGGAGTGGATTTCCGGCGATGACAGGCGGCTACTGACGGCGTATACGCTGACTGCTAACGTGGTGGTGGCAGCAGACGGCAGCGGGGACTACACGACAGTATCAGCTGCGGTGGCTGCAGCTCCCAAAGGGATCACTAGCAGCAGCAATAGATATATAATTAAAATAAAAGCAGGAGTGTACAGAGAGAATGTAATTGTACCAAAGGAGAAGCCTTACCTCATGTTCTGGGGAGAAGGTAGTGATAAAACTATGATCACAGCAAGTAAAAATAACGTTGATGACGGTTCAACTTATAACTCTGCCACAGTAGCCGTAGATGGTGAAGGATTCTTGGCACAAGGGATAACCATCCAGAATGCAGCAGGTGCTATAAAGATGCAAGCGGTGGCCCTACGAGTTGGTGCTGACTACTCAGCGTTCTATAAGTGCAGCTTCACAGGACACCAAGACACCCTTTATGTTCACAGCAATCGTCAATTCTTTGTCAACTGCTTCATTGCAGGCACTGTGGACTTCATCTTTGGCAACTCAGCTGTTGTGTTCCAAGACTGTGACATCAAACCCACAGTTCCCCTTTCAGGGCAACAAAACATGATGACCGCACAGGGACGCACAGAGGCTAACCAGAACACCGGAATTGTGATCCAAAAATGTAGGATTGATGCCACCAAGGAATTGAAAGCTCAATTGGACAGCTTCACTTCGTATTTAGGGAGGCCATGGCAAGAGTATTCTAGGACTGTGGTCATGCAATCCACAATAAGTAATGTGATCGACCCTGCTGGGTGGCATCCCTGGAACGAATCTGATTTTGCGTTGAATACGTTGTATTATGGAGAGTATCAGAACAGTGGAGCTGGTGCTGACACCTCTAACAGGGTTACCTGGAAAGGGTTTAAGGTCATTGCGGATTCGGTGACTCCTAACGTGGTGGTGGCGGCGGACGGCAGCGGGAACTACAGGACAGTGTCTGCTGCGGTGGCTGCAGCTCCAGAGAAGAGTGGCAAGAGATATGTAATTAGGATAAAAGCAGGAGTGTACAGAGAGAATGTGGAAGTGCCAAGGACGAAGACGAATATCATGTTCGTGGGTGATGGCAATGAAAAGACAATCATCACAGCCAGTAGAAATGTTGTTGACGGTAGCACAACTTTTAATTCTGCCACAGTCGCTGTAGTGGGTGAAAGATTCTTGGCACGAGGAGTAGCCTTCCAGAACGCAGCAGGGCCTTCAAAGCACCAAGCGGTGGCCTTGCGAGTTGGAGCTGACCTGGCAGCGTTCTATAAGTGCAGCTTCATAGCATACCAAGATACCCTTTATGTCCACAGCAATCGTCAATTCTTCGTAAAGTGCTACATAGCAGGAACTGTGGACTTCATCTTTGGCAACTCAGCTGCTGTGCTCCAAGACTGTGACATCCGCGCCAGGCGTCCCAATCCAAGCCAAAAGAACATGCTCACCGCACAAGGACGCACTGACCCCAATCAAAACACAGGCATTGTCATCCAAAAATGTAGGATTGGTGCCACCTCGGATTTGCAAGCTGTCCTAAGCAGCTTCCCTACGTATTTAGGGAGACCATGGAAGGAGTACTCTAGGACTGTCGTCATGCAATCAACCATAAGTAATGTCATTCATCCAGCTGGCTGGTTTGAGTGGGATGGGAATTTTGCCTTGAACACATTGTATTATGGAGAGTATAAGAACAGTGGGGCTGGTGCTGACACCTCTAAGAGGGTTACCTGGAAAGGGTTTAAGGTCATTACAAGTGCTTCTGAGGCACAGGCGTTTACTCCTGGGAGTTTCATTGCAGGTTCCAGCTGGTTGCCTTCTACTGGCTTCCCTTACTCTCTTGGGCTGTAG 1902 0.4863 MVVDEEEDGIKWPEWISGDDRRLLTAYTLTANVVVAADGSGDYTTVSAAVAAAPKGITSSSNRYIIKIKAGVYRENVIVPKEKPYLMFWGEGSDKTMITASKNNVDDGSTYNSATVAVDGEGFLAQGITIQNAAGAIKMQAVALRVGADYSAFYKCSFTGHQDTLYVHSNRQFFVNCFIAGTVDFIFGNSAVVFQDCDIKPTVPLSGQQNMMTAQGRTEANQNTGIVIQKCRIDATKELKAQLDSFTSYLGRPWQEYSRTVVMQSTISNVIDPAGWHPWNESDFALNTLYYGEYQNSGAGADTSNRVTWKGFKVIADSVTPNVVVAADGSGNYRTVSAAVAAAPEKSGKRYVIRIKAGVYRENVEVPRTKTNIMFVGDGNEKTIITASRNVVDGSTTFNSATVAVVGERFLARGVAFQNAAGPSKHQAVALRVGADLAAFYKCSFIAYQDTLYVHSNRQFFVKCYIAGTVDFIFGNSAAVLQDCDIRARRPNPSQKNMLTAQGRTDPNQNTGIVIQKCRIGATSDLQAVLSSFPTYLGRPWKEYSRTVVMQSTISNVIHPAGWFEWDGNFALNTLYYGEYKNSGAGADTSKRVTWKGFKVITSASEAQAFTPGSFIAGSSWLPSTGFPYSLGL. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06128 633 ProSitePatterns Pectinesterase signature 2. 179 188 IPR033131 -
Seca1g06128 633 FunFam Pectinesterase 319 633 - -
Seca1g06128 633 ProSitePatterns Pectinesterase signature 1. 347 366 IPR018040 -
Seca1g06128 633 FunFam Pectinesterase 26 318 - -
Seca1g06128 633 Pfam Pectinesterase 322 618 IPR000070 GO:0030599|GO:0042545
Seca1g06128 633 Pfam Pectinesterase 32 318 IPR000070 GO:0030599|GO:0042545
Seca1g06128 633 ProSitePatterns Pectinesterase signature 2. 466 475 IPR033131 -
Seca1g06128 633 Gene3D - 26 318 IPR012334 -
Seca1g06128 633 Gene3D - 319 633 IPR012334 -
Seca1g06128 633 SUPERFAMILY Pectin lyase-like 320 632 IPR011050 -
Seca1g06128 633 PANTHER PECTINESTERASE 321 623 - -
Seca1g06128 633 SUPERFAMILY Pectin lyase-like 28 317 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06128 Seca-Chr1 164579096 164586677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06128 238 633 Carbohydrate Esterase AT3G14310 65.743 1.52e-173 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06128 K01051 - vvi:100251413 544.658