Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06123 ATGAGTGACTCATCGGTGGCAAGTGACAATTTGGGTGATTCCCCAGCGGTTGAGTTAACCGGCAAGATTATGGTGGCGGCTATAATTATCCTATTCATGGTTGTTGTATGTGCTGTGGCCTTCCATCTCTTTGCCAGAGGGTACTGGTGGCGCATTGGAGACAGTATTGCTCCCCAATCCCGCCGCCGCCGCCGCTTTTCTTTTAACTCCGGTCAAGATAGTGCTCTTCGAGCTGGCCTTGATCCTTCTGTCCTAAGGTCCCTACCCGTACTGGTGTTCCAACCCCAAGACTTCAAGGATGGTTTAGAATGTGCAGTTTGTCTCTCTGAGCTTGTTGAAGGAGAAAAGGCTAGACTTTTACCCAAATGCAATCATGGGTTTCACGTGGATTGCATTGATATGTGGTTCCAATCTCATTCTACCTGCCCTATATGCAGGAACCCTATTGGCTCCAAATCCGGTATAAGTACTAGTGCCTCGGAGAATATTGAATCACCATCAGGTGCAGAAAATTCAGCTGACGTAAGTGGCTTAGAAACTCCAACTTTTCCTACAAATGTGTTGATTTGGGGGAACCAGACCCAAATAAGTTCTACTGGTGATTCTTTGGAAGAAAGTACTTCTCAGCCACCTTGCTCCTCCTCATCCTCTTCGGCGGGTAGTTGTAGTGATAATAATGGAAGGCTAGTGATTGATATACCAAATGAGATCACTTCATCCTCTTTATCACCTTCTGTTAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATTACAGGGAGACTGAGGTCATTGAAGAGACTTCTAAGCAGGGACAGAAGGCTAAATCCTTGGAGTCCCACTTCTACTGATTTGGAACAAGCAAGGGAAGGACAAAGCTAG 882 0.4615 MSDSSVASDNLGDSPAVELTGKIMVAAIIILFMVVVCAVAFHLFARGYWWRIGDSIAPQSRRRRRFSFNSGQDSALRAGLDPSVLRSLPVLVFQPQDFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPICRNPIGSKSGISTSASENIESPSGAENSADVSGLETPTFPTNVLIWGNQTQISSTGDSLEESTSQPPCSSSSSSAGSCSDNNGRLVIDIPNEITSSSLSPSVSRFAEDELKSPITGRLRSLKRLLSRDRRLNPWSPTSTDLEQAREGQS. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06123 293 SMART ring_2 104 145 IPR001841 -
Seca1g06123 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 154 IPR013083 -
Seca1g06123 293 SUPERFAMILY RING/U-box 84 152 - -
Seca1g06123 293 MobiDBLite consensus disorder prediction 198 225 - -
Seca1g06123 293 MobiDBLite consensus disorder prediction 198 227 - -
Seca1g06123 293 FunFam RING-H2 finger protein ATL3 72 151 - -
Seca1g06123 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 191 - -
Seca1g06123 293 MobiDBLite consensus disorder prediction 275 293 - -
Seca1g06123 293 MobiDBLite consensus disorder prediction 156 177 - -
Seca1g06123 293 CDD RING-H2_EL5-like 103 146 - -
Seca1g06123 293 Pfam Ring finger domain 103 146 IPR001841 -
Seca1g06123 293 MobiDBLite consensus disorder prediction 273 293 - -
Seca1g06123 293 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06123 Seca-Chr1 164540876 164541757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06123 18 276 C3H Transcription Factor Family AT1G53820 41.297 1.55e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06123 - - zju:107434456 322.398