Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06120 ATGGCAAAGAAAGTCAATGATTTATGTGGTATCAAAGAATCTGACACTGGTTTGGCTGCTCCAAGCCAGTGGGACCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACTAAGATTATAAATCCAAATTCCGAAGATGCCAAATATGTTATCAATGTGAAGCAGATCGCAAAGTTTGTCGTTGGGCTGGGTGACAAAGTTTCCCCAACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATCGAAACAAATATCAGATTCAGATTCCGTTGCCCCCAAAAATTGACCCAAGTGTTACAATGATGACAGTTGAAGAGAAACCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTCCACCCAGAGAAATTTGTTAAGCTTGGAATTGATCCTCCAAAGGGCGTTCTTTGCTATGGTCCACCAGGGACTGGCAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGGGTCATAGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGGATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCGCACAATGCTTGAAATCGTGAATCAACTTGATGGGTTTGATGCTCGAGGAAATATTAAAGTCTTGATGGCAACTAACAGGCCTGACACTCTAGATCCAGCACTACTACGGCCTGGACGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTGGAAAGTAGGACTCAAATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCTAATTCCACTGGAGCCGATATAAGGAGTGTTTGTACTGAAGCTGGTATGTATGCTATTCGAGCCCGAAGGAAGACTGTAACGGAAAAAGATTTCCTTGATGCAGTTAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTACAACTGA 1140 0.4316 MAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06120 379 Gene3D - 18 110 IPR012340 -
Seca1g06120 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 369 IPR027417 -
Seca1g06120 379 Gene3D - 111 290 IPR027417 -
Seca1g06120 379 Pfam AAA+ lid domain 313 356 IPR041569 -
Seca1g06120 379 FunFam 26S protease regulatory subunit 7 292 363 - -
Seca1g06120 379 Pfam ATPase family associated with various cellular activities (AAA) 158 290 IPR003959 GO:0005524|GO:0016887
Seca1g06120 379 ProSitePatterns AAA-protein family signature. 261 279 IPR003960 GO:0005524|GO:0016887
Seca1g06120 379 SMART AAA_5 154 293 IPR003593 GO:0016887
Seca1g06120 379 FunFam 26S protease regulatory subunit 7 1 110 - -
Seca1g06120 379 CDD RecA-like_PAN_like 119 289 - -
Seca1g06120 379 Gene3D - 292 374 - -
Seca1g06120 379 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 365 - -
Seca1g06120 379 FunFam 26S protease regulatory subunit 7 111 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06120 Seca-Chr1 164506037 164510479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06120 123 344 Calmodulin-binding Proteins AT3G56690 37.220 4.48e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06120 K03061 - gmx:100796358 761.525