Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06119 ATGCGGCTTTTCCTTTTACCCAGTAACATTAAGCTTATTGATATCGGTGAAGTTAACTGTGTGGGTCAAAATCAGATATTGAACCAAAATGTTGGATCTGGATATGATGCACCTGAAGTTGCCTTGTCTGGTCAGTATACTCTGAAAAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAGCTTCTCAGTGGACGGAAACCATTTGATAGCACAAGGCCAAGATCCGAGCAGTCTTTGGTTAGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCACTGAAAGGGCTATATCCTGTTAAATCTCTTTCTCGTTTTGCCGATGTTATTGCTCTTTGCGTTCAGCCGGAGCCTGAATTCCGACCGCCTATGTCAGAAGTGGTTCAAGCACTGGTACGGTTAGTACAGCGAGCTAACATGAGCAGGCGAACAACATTTGGAAGTGATCATGGATCCAACCGAGGGAGTGATGAGCCAGCCATCCGAGACATCTAA 519 0.4489 MRLFLLPSNIKLIDIGEVNCVGQNQILNQNVGSGYDAPEVALSGQYTLKSDVYSFGVVMLELLSGRKPFDSTRPRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSRRTTFGSDHGSNRGSDEPAIRDI. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06119 172 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06119 172 Pfam Protein kinase domain 8 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06119 172 MobiDBLite consensus disorder prediction 150 172 - -
Seca1g06119 172 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 5 153 - -
Seca1g06119 172 Gene3D Transferase(Phosphotransferase) domain 1 4 161 - -
Seca1g06119 172 SUPERFAMILY Protein kinase-like (PK-like) 9 140 IPR011009 -
Seca1g06119 172 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 32 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06119 Seca-Chr1 164504353 164505293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06119 24 152 Strubbelig Receptor Gene Family AT3G14350 88.372 3.43e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca1g06119 Pkinase 2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06119 - - psat:127132034 274.248