Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06118 ATGTGTCATAATGCAGAAGCAAAGTCTGTGCAAACTACTACCTCTGTAATTGACTTGAAGATGTTTGATACTTCTGCCTCAATAAATCTTAAACCTCCACCTATTGATCGTCATAAATCATTTGATGACAATGAATTCTCAAAGAAGTCTGCTGTTGTTAAGAAGACTGTAACAGCTCCTGCAGATGTGCAATTGTATTCTATTGCTGATCTGCAGATTGCTACTGGTAGCTTCAGTGTGGATTATCTTGTTGGTGAGGGATCTTTTGGGCGTGTGTACCGTGCTCAGTTTGATGATGGAAAGGTTCTTGCAGTGAAGAAAATAGATTCATCTGTCCTTCCCAGTGATTTGTCAGAAGATTTTACAGAAATAGTGTCAAACATCTCCCATTTACATCATCCAAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGTATGGACAACACCTCCTAGTCTATGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACCTATCAGATGAATATAGTAAACCATTGATATGGAATTCCCGTGTCAAGATAGCTTTGGGGACTGCGCGAGCTTTAGAGTACCTACATGAAGTTTGTTCTCCGTCAGTTGTTCATAAGAATATTAAATCAGCCAATATATTACTTGGTACAGAGCTTAATCCTCATCTTTCAGACAGTGGATTGGCAAGCTATATTCCAAATGCAGACCAGGTGATTTTATGTTTTTGGAAATTTATGTTGTGA 741 0.3833 MCHNAEAKSVQTTTSVIDLKMFDTSASINLKPPPIDRHKSFDDNEFSKKSAVVKKTVTAPADVQLYSIADLQIATGSFSVDYLVGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPSDLSEDFTEIVSNISHLHHPNVTELVGYCSEYGQHLLVYEFHKNGSLHDFLHLSDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLGTELNPHLSDSGLASYIPNADQVILCFWKFML. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06118 246 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Seca1g06118 246 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 42 155 - -
Seca1g06118 246 SUPERFAMILY Protein kinase-like (PK-like) 61 237 IPR011009 -
Seca1g06118 246 PANTHER OS01G0253100 PROTEIN 40 233 - -
Seca1g06118 246 ProSiteProfiles Protein kinase domain profile. 78 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06118 246 Pfam Protein tyrosine and serine/threonine kinase 83 236 IPR001245 GO:0004672|GO:0006468
Seca1g06118 246 Gene3D Transferase(Phosphotransferase) domain 1 157 238 - -
Seca1g06118 246 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06118 Seca-Chr1 164502208 164503743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06118 6 238 Strubbelig Receptor Gene Family AT1G53730 72.650 3.61e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca1g06118 PK_Tyr_Ser-Thr 7.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06118 - - gmx:100807707 407.912