Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06117 ATGCTGGAGGTTCCAAGGTTGCTGCTGATGCTGTTCATCAGCACTTGCATTCTTCGTTGGATGCCCAATGGTGTCACTGCCACAGATCCAAATGATGTTGCTGCTGTGAAGGCTATGTTTCAAAGCATGAACTCACCATCCCAGCTAGGTTGGCCTGCTAATGGTGATGATCCCTGTGCACAGTCCTGGAAAGGCATCACTTGTTCAGGCAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTAACTGGAACATTGGCCTATGGATTACAAGCCTTAACATCTGTGACCACCCTAGACATGAGTAACAACAATCTTGTAGGAACTATACCATACCAACTTCCTCCAAATGTGCAGCGCCTAAATCTTGCTTATAATAACCTTACCGGGACAGTTCCTTACTCAATTTCTAGCATGGCCTCTCTTACAGACCTGAATCTCGGTCACAATCAGCTCCAGCAAGGACTGGCTGTCGACTTTCAAAATCTTTCTTCCCTCTCCAAATTGTATCTGCAAAGCAACCAGTTTACAGGCACTATTGATGTCCTTGCTAATCTGCCTCTGGATAGTCTGAATGTGGAAAACAATCATTTTACAGGATGGATACCAGAACAGTTGAAAAACATTGACCTACAGACTGGTGGCAATGCATGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAGCACCTAAGAGCAACCGACACCATAAATCTGGTGGTGGAAGTACCACTGTCCAAGATGCTGGCAGTGGCACAACTGATGAGGGCAAAAAATCTGGAATAGGGGTTGGTGGCATAGCTGGAGTTGTGATCTCCATCATTGTTGTTGGGGCAATAGTAGCATTCTTTTTGGTGAAGAGAAAATCCAAGAAGTCATCTTCAGATTTAGAAAAGCTGGGCAATCAGTCCTTTGCTCCTCTTCCTTCAAATGAAGTGCATGTTATATCTGCAGAAGCCACTTATTCTATTGATGGTTCTTATACTTGA 1002 0.4511 MLEVPRLLLMLFISTCILRWMPNGVTATDPNDVAAVKAMFQSMNSPSQLGWPANGDDPCAQSWKGITCSGNRVTEIKLSNLGLTGTLAYGLQALTSVTTLDMSNNNLVGTIPYQLPPNVQRLNLAYNNLTGTVPYSISSMASLTDLNLGHNQLQQGLAVDFQNLSSLSKLYLQSNQFTGTIDVLANLPLDSLNVENNHFTGWIPEQLKNIDLQTGGNAWSSGPAPPPPPGTPPAPKSNRHHKSGGGSTTVQDAGSGTTDEGKKSGIGVGGIAGVVISIIVVGAIVAFFLVKRKSKKSSSDLEKLGNQSFAPLPSNEVHVISAEATYSIDGSYT. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06117 333 Gene3D Ribonuclease Inhibitor 29 223 IPR032675 -
Seca1g06117 333 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 77 298 - -
Seca1g06117 333 MobiDBLite consensus disorder prediction 241 258 - -
Seca1g06117 333 MobiDBLite consensus disorder prediction 214 264 - -
Seca1g06117 333 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Seca1g06117 333 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 170 - -
Seca1g06117 333 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Seca1g06117 333 SUPERFAMILY L domain-like 28 208 - -
Seca1g06117 333 MobiDBLite consensus disorder prediction 221 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06117 Seca-Chr1 164496912 164501454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06117 6 318 Strubbelig Receptor Gene Family AT3G14350 52.000 3.71e-89 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06117 - - gmx:100807707 441.039