Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06114 ATGACAATGATTGGAGATACAACGCTGACCAAAGTGTTTGTGGGAGGGCTAGCGTGGGAAACCCCCAAAGAAACATTGAGAGAGCACTTTGAAAAGTTCGGTGAGATCCTTGAAGCCGTCATCATTTCCGATAAGCTCACCGGCAGATCCAAAGGCTACGGCTTTGTAACGTTCAAGGAAGCAGAGGCGGCGAAGAAGGCTTGCGAGGAACCAACTCTGATTATCAATGGACGCCGAGCCAACTGCAATCTGGCATCGCTGGGTGCACGCCGTCCAAGCAGGCCTTCTTCTCCTCCTCCTCAGACACAAGGAACGAGGATTAATGGCAACCTGCAGGTTCAGTGGTATTATCCCGTGGCAACACCAACACCTGCACCTGCTTCCCCATTCCATCATCACGCCTTTCCTTTCTACGGGTACACGCCCACTTACATTGCAGCAGACGTAAATTACAATTACAATTACAATTACAATCAGAAGGTGAACTATGGAAGTGGCTACGGGTACATGAATGGGCATGTGTACCCAAACCCAAGCCAGGCACAGGCAATTGTGGGCGCAATGCCAATGTCAATGTACCACTTCCACCGAAGTGAGACAATGGGCGTACCTGCTGCCCACTTCTTCCACCCAATCACTCCCTCAGGTCCAGTTGCCACGGGTGAATGCTTCAAATAA 678 0.5059 MTMIGDTTLTKVFVGGLAWETPKETLREHFEKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEPTLIINGRRANCNLASLGARRPSRPSSPPPQTQGTRINGNLQVQWYYPVATPTPAPASPFHHHAFPFYGYTPTYIAADVNYNYNYNYNQKVNYGSGYGYMNGHVYPNPSQAQAIVGAMPMSMYHFHRSETMGVPAAHFFHPITPSGPVATGECFK. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06114 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 87 IPR000504 GO:0003723
Seca1g06114 225 SMART rrm1_1 11 83 IPR000504 GO:0003723
Seca1g06114 225 FunFam Putative RNA-binding protein ARP1 4 92 - -
Seca1g06114 225 MobiDBLite consensus disorder prediction 87 106 - -
Seca1g06114 225 Gene3D - 5 90 IPR012677 -
Seca1g06114 225 SUPERFAMILY RNA-binding domain, RBD 9 170 IPR035979 GO:0003676
Seca1g06114 225 PANTHER BOULE-RELATED 5 194 - -
Seca1g06114 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06114 Seca-Chr1 164471438 164473470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06114 6 86 C2H2 Transcription Factor Family AT2G19380 44.444 1.08e-16 76.6