Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06112 ATGACACAGGGAACTCCCAGTCACAGTTGCAGACAAAGACCCTCTTCCTCTTCCTCTTCCATGTTCATAATATTGTTAGTCCTGTCTTGGTTCCTGGTTCTTGTTGAAGCCTCCTCATGTAACCAACTGGATAGAGACTCGCTCTTGGCCTTCTCCATGAGCATATCCCCTCCTCTCAATTGGTCTTCTTCTGTTGATTGCTGCCTTTGGGAAGGTATTCTTTGTGAAGATGGGGATCTCAGAGTCACTCGTCTATTGCTACCATCCAGAGGTCTCACTGGCTTTATCTTCCCATCTCTTACAAACCTCACTGCTCTCTCTCACCTTAATCTCTCCCATAATCGGTTATCTGGTAATCTCCCAAACCAATTTTTCTCACTTCTTAACCACTTGCAAATTCTTGATTTAAGCAACAATCGTCTCTCTGGTGAATTGCCACTCTTTGTTGTTAATAACAGTAACAGTGCTAGGACTAGTTTCATCCAGGAGTTGGATTTGTCTAGTAATTTATTCAACGGAACACTCCCAGATTCTCTCCTTCACCACCTGGCAGCTGCAGCCACAGGGGGGAGTTTGACATCTTTTAATGTTAGTAACAATAGCTTCACCGGTCAAATTCCCACTTCTCTCCTCTGCAGTAATGACAACAACTCATCCTCTATCAGATTCTTGGATTATTCCTTCAACCATTTCAGTGGCATGGTTCTGCCTGGACTAGGAGCATGTTCCAAGCTGGAGAAATTTCGAGCAGGTTTCAATTTACTATCCGGGCCTCTTCCCAGTGATATTCTTTATGCTGTTGCTCTCACAGAACTCTCCTTGCCCCTCAATGAACTCAGTGGAACCATTGGTGATGGCATTGTTAGTCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACAGGGCCTATTCCCATGGATATTGGTAAGCTCTCCAAATTGGAACGGCTGGTCCTTCGCGCCAACAATCTGACTGGTACTCTGCCCCCATCTCTGATGAACTGTGTCAATCTTGTCATGTTGGATTTAAGGATCAACTCCTTGAAGGGAAATCTCTCAGCATTCAATTTCTCTGGACTCCTCAGGCTCACTACACTTGACCTTGGCAACAATAGCTTTACTGGTATTTTACCACCAACCCTTTATGCATGCAAGTCACTTAAGGCAGTAAGGCTATCATCTAATCAGCTTGAAGGACAGATCTCACCTGACATACTTAGACTTCATTCTCTGGCTTTCCTATCAGTCTCTACCAACAAATTGACTAATGTCACTGAGGCTCTGAGGATACTCATGCGGCTCAAGAACCTTAGTACCCTTATGCTCTCTCAGAATTTTTTTGGTGAAATGATGCCAAGTGATGCAAACATAATAGACTCAGATGGATTCCAAAAAATCCAGGTTCTAGGGTTGGGTGCTTGTAAATTCACAGGCCAAATACCAGGTTGGCTTGTTAATCTGAAGAAGCTTGAGGTCTTGGATCTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTAGGCACACTTCCTCAGCTTTTCTACATAGACTTATCTTTTAACCTCCTTACAGGAAAATTTCCTATGGAGCTCACAAGGCTTACAGCACTTACATCTCAACAGGCATATGATGAAGTAGAAAGGACTTACCTGGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCCCAAATGCAATATAACCAGCTTTCAAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAATGAAAGTATCCCCATAGAGATTGGCCTGCTGAAAGTCCTTCATCAGCTGGACCTTAGTTGTAACCAATTCTCTGGCAATATCCCAGTTCAAATTTCTAACTTGACTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGTTTCACTCAAGAATTTGCATTTTTTATCTGTTTTCAATGTGGCACACAATGATCTTCAGGGACAGATACCAACTGGTGGTCAATTTGATACTTTCACTGCCTCCAGCTTTGAAGGAAACCCCAAGTTGTGTGGTTCAGTTGTTCAGCGCTCTTGTCTTCCTCAAAATGCTAGGACTGCAGGTGGTCACAATTCAAGGAAAAAACTAATAATTGGATTTGTCATTGCAGCCTGTTTTGGCACTGTTTCCTTCATTTCAGTGTTGATAGTGTGGATACTGTCCAAGAGGAGGATCAGTCCAGGAGGAGACTCTGACGAGATTGAATCAGAATCAATTTTTGCCAGCTCTGACGGGGGGCTTCATCTTGAGGTTGACAAAGAGGCTAGCCTAGTGGTATTGTTCCCTAATAAAACAAATGAAATCAAGGATCTTACCATAGTTGAAATATTAAAGGCCACTGAAAATTTCAGTCATGAAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACTTTACCAGATGGAACTACTCTAGCCATCAAGAAACTTTCAGGAGATATGGGTCTTATGGAAAGGGAATTTAAAGCAGAGGTAGAGACTTTGTCTACAGCACAACATGAGAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGAGGGCTTTAGGCTTCTCATATATAGTTACATGGAAAATGGAAGTCTGGATTACTGGTTACATGAAAAGGATGATGGTCCATCTCATATTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCATATATGTGAACCACACATAGTGCATCGTGATATAAAGTCAAGCAATATACTCCTTGATGAGAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGGCCCGATTGATTCTTCCTTATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCGGAATATGGGCAGGCATGGGTGGCAACTATGAGAGGAGATATCTACAGCTTTGGGGTTGTCATGCTTGAGCTTGTCACTGGGAGGAGGCCTGTTGATGTGTCCAAACCAAAAATGTCAGGAGAGTTGGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGGAAACAAGATCAAGTCTTTGACCCTCTCTTGAGAGGGAAGGGCTTTGAAGAAGGGATGCTGCAGGTACTTGATGTGGCCTGCATGTGTGTCAACCAGAATCCTCTTAAGAGACCAACCATCAGAGAAGTTGTTGAATGGCTAAAGAATGTAGGATCATCTAACTAA 3228 0.4263 MTQGTPSHSCRQRPSSSSSSMFIILLVLSWFLVLVEASSCNQLDRDSLLAFSMSISPPLNWSSSVDCCLWEGILCEDGDLRVTRLLLPSRGLTGFIFPSLTNLTALSHLNLSHNRLSGNLPNQFFSLLNHLQILDLSNNRLSGELPLFVVNNSNSARTSFIQELDLSSNLFNGTLPDSLLHHLAAAATGGSLTSFNVSNNSFTGQIPTSLLCSNDNNSSSIRFLDYSFNHFSGMVLPGLGACSKLEKFRAGFNLLSGPLPSDILYAVALTELSLPLNELSGTIGDGIVSLTNLTVLELYSNNFTGPIPMDIGKLSKLERLVLRANNLTGTLPPSLMNCVNLVMLDLRINSLKGNLSAFNFSGLLRLTTLDLGNNSFTGILPPTLYACKSLKAVRLSSNQLEGQISPDILRLHSLAFLSVSTNKLTNVTEALRILMRLKNLSTLMLSQNFFGEMMPSDANIIDSDGFQKIQVLGLGACKFTGQIPGWLVNLKKLEVLDLSYNQISGSIPPWLGTLPQLFYIDLSFNLLTGKFPMELTRLTALTSQQAYDEVERTYLELPVFANANNVSQMQYNQLSNLPPAIYLGNNSLNESIPIEIGLLKVLHQLDLSCNQFSGNIPVQISNLTNLEKLYLSGNQLSGEIPVSLKNLHFLSVFNVAHNDLQGQIPTGGQFDTFTASSFEGNPKLCGSVVQRSCLPQNARTAGGHNSRKKLIIGFVIAACFGTVSFISVLIVWILSKRRISPGGDSDEIESESIFASSDGGLHLEVDKEASLVVLFPNKTNEIKDLTIVEILKATENFSHENIIGCGGFGLVYKATLPDGTTLAIKKLSGDMGLMEREFKAEVETLSTAQHENLVALQGYCVHEGFRLLIYSYMENGSLDYWLHEKDDGPSHIDWPTRLKIAQGASCGLAYMHHICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYHTHVTTELVGTLGYIPPEYGQAWVATMRGDIYSFGVVMLELVTGRRPVDVSKPKMSGELVAWVQQMRSEGKQDQVFDPLLRGKGFEEGMLQVLDVACMCVNQNPLKRPTIREVVEWLKNVGSSN. 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06112 1075 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 260 355 - -
Seca1g06112 1075 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 269 1069 - -
Seca1g06112 1075 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 766 872 - -
Seca1g06112 1075 Pfam Leucine rich repeat 469 527 IPR001611 GO:0005515
Seca1g06112 1075 Pfam Leucine rich repeat 340 400 IPR001611 GO:0005515
Seca1g06112 1075 FunFam Leucine-rich repeat receptor-like kinase 46 159 - -
Seca1g06112 1075 SMART LRR_sd22_2 128 143 - -
Seca1g06112 1075 SMART LRR_sd22_2 623 649 - -
Seca1g06112 1075 SMART LRR_sd22_2 490 505 - -
Seca1g06112 1075 SMART LRR_sd22_2 103 122 - -
Seca1g06112 1075 SMART LRR_typ_2 103 127 IPR003591 -
Seca1g06112 1075 SMART LRR_typ_2 623 646 IPR003591 -
Seca1g06112 1075 SMART LRR_typ_2 411 434 IPR003591 -
Seca1g06112 1075 SMART LRR_typ_2 490 514 IPR003591 -
Seca1g06112 1075 SMART LRR_typ_2 314 338 IPR003591 -
Seca1g06112 1075 SMART LRR_typ_2 128 152 IPR003591 -
Seca1g06112 1075 SMART LRR_typ_2 363 387 IPR003591 -
Seca1g06112 1075 FunFam Leucine-rich repeat receptor-like protein kinase 873 1075 - -
Seca1g06112 1075 FunFam Tyrosine-sulfated glycopeptide receptor 1 360 698 - -
Seca1g06112 1075 Pfam Protein kinase domain 798 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06112 1075 Pfam Leucine rich repeat N-terminal domain 44 75 IPR013210 -
Seca1g06112 1075 SUPERFAMILY L domain-like 466 690 - -
Seca1g06112 1075 Gene3D Ribonuclease Inhibitor 358 701 IPR032675 -
Seca1g06112 1075 SUPERFAMILY L domain-like 212 543 - -
Seca1g06112 1075 Gene3D Phosphorylase Kinase; domain 1 762 872 - -
Seca1g06112 1075 Gene3D Ribonuclease Inhibitor 41 186 IPR032675 -
Seca1g06112 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Seca1g06112 1075 Gene3D Ribonuclease Inhibitor 264 357 IPR032675 -
Seca1g06112 1075 Pfam Leucine Rich Repeat 625 647 IPR001611 GO:0005515
Seca1g06112 1075 ProSiteProfiles Leucine-rich repeat profile. 492 515 IPR001611 GO:0005515
Seca1g06112 1075 ProSitePatterns Protein kinases ATP-binding region signature. 803 826 IPR017441 GO:0005524
Seca1g06112 1075 ProSiteProfiles Protein kinase domain profile. 797 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06112 1075 ProSiteProfiles Leucine-rich repeat profile. 625 648 IPR001611 GO:0005515
Seca1g06112 1075 Gene3D Ribonuclease Inhibitor 187 263 IPR032675 -
Seca1g06112 1075 Gene3D Transferase(Phosphotransferase) domain 1 873 1075 - -
Seca1g06112 1075 SUPERFAMILY Protein kinase-like (PK-like) 781 1068 IPR011009 -
Seca1g06112 1075 SUPERFAMILY L domain-like 59 261 - -
Seca1g06112 1075 SMART serkin_6 797 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06112 1075 PRINTS Leucine-rich repeat signature 490 503 - -
Seca1g06112 1075 PRINTS Leucine-rich repeat signature 131 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06112 Seca-Chr1 164462556 164465783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06112 13 731 Miscellaneous Gene Families AT1G17240 51.377 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca1g06112 Pkinase 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06112 - - ccaj:109797788 1731.84