Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06109 ATGCATGCATACAGTTCCCAGAAGAACGGATCACCCTTGGGAACCCCAAAAGCTTCTTTTCTTAGTGGGAGGAAATTGAGGGTGAACAAGTACACGGCACCAGTTGGAGCACGATCCACCACTACAGTGTGTGCAGTAGCTGACCCTGACAGACCCCTCTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCAGTCTCCCTGGAGACTTTGGGTTTGATCCTCTAGGTCTTGGATCTGACCCTGAGAGCCTGAGATGGAATGTTCAGGCAGAGCTTGTGCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATTCCAGAATTCCTAACAAAGATTGGCATCTTAAACACCCCCTCATGGTACACAGCTGGAGAACAGGAATACTTCACAGACACCACTACCCTCTTCATAGTTGAGCTCATTTTCATTGGCTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGGACTGATGTTGGTTACCCAGGTGGGCTTTGGTTTGACCCCCTTGGATGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGATTGGCCATGTTGGCTGTCATGGGTGCATGGTTCCAGCACATATACACTGGCACCGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCCACCATTTTTGCTGTAAGCTTTCACACCCAAGTGAAGAGGCTAAGAACAGCTCTGGATGAAATTGAGAGCCTGGGAGAAACATTGGTGAGAATGTTTGACCCAGGTAATAGAGCTCAGGTGTCTTTAGGAGAGGAGTGTTTATGTCAGTAG 891 0.5006 MHAYSSQKNGSPLGTPKASFLSGRKLRVNKYTAPVGARSTTTVCAVADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAVSFHTQVKRLRTALDEIESLGETLVRMFDPGNRAQVSLGEECLCQ. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06109 296 FunFam Chlorophyll a-b binding protein, chloroplastic 61 246 - -
Seca1g06109 296 Pfam Chlorophyll A-B binding protein 60 226 IPR022796 -
Seca1g06109 296 SUPERFAMILY Chlorophyll a-b binding protein 46 255 - -
Seca1g06109 296 Gene3D Chlorophyll a/b binding protein domain 61 246 - -
Seca1g06109 296 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 41 252 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06109 Seca-Chr1 164436530 164437837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06109 32 252 Chloroplast and Mitochondria Gene Families AT3G61470 89.189 6.34e-147 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06109 K08908 - gmx:100784089 506.908