Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06107 ATGGGGGAAGCAGTGCCTGTGGGATATAGATTCCATCCCACAGATGAAGAGCTTGTGGCCCACTACCTCAAATATAAGCTTCTGGGCGATGATTCCAGGGTCTGCAATACCATTGCTGAGGTTGATGTTTGCAAATTTGAGCCTTGGGACTTACCAGCATTTTCCAAGGTAAAATCGGATGACCCTGAATGGTTTTTCTTCAGTCCTCGCGATTTGAAGTACACAAATAGTAGCAGGTCTAACAGGGCAACCAAAGCTGGCTACTGGAAGGCCACTGGTAAAGACCGTAACATCAAGATACGTGGCACCAACAATGTCATTGGCACCAAGAAGACTCTGGTTTTCTACAGGGGACGTGTTCCTCATGGTGTCAAGACCAATTGGGTTATTCACGAATATCATGCAATTACATTTCCTGTTGATAAGGTAAAGGTTGGGGGTTTTAACTTTTAA 453 0.4481 MGEAVPVGYRFHPTDEELVAHYLKYKLLGDDSRVCNTIAEVDVCKFEPWDLPAFSKVKSDDPEWFFFSPRDLKYTNSSRSNRATKAGYWKATGKDRNIKIRGTNNVIGTKKTLVFYRGRVPHGVKTNWVIHEYHAITFPVDKVKVGGFNF. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06107 150 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
Seca1g06107 150 Gene3D NAC domain 14 143 IPR036093 GO:0003677|GO:0006355
Seca1g06107 150 SUPERFAMILY NAC domain 4 137 IPR036093 GO:0003677|GO:0006355
Seca1g06107 150 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 134 - -
Seca1g06107 150 Pfam No apical meristem (NAM) protein 6 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06107 Seca-Chr1 164431539 164435295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06107 3 146 NAC Transcription Factor Family AT4G35580 61.111 6.03e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g06107 NAM 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06107 - - pcin:129287580 230.72