Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06105 ATGGAGTTGATACAACAAGTGAAAGGGTATTCTGATAGCAGGGAAGAAGAGGAGGAAGAGGAAGCAGCTGCTGCAGCAGAGATTATCACAATCACAGGCGAAGAAAGCAGCAGCAGCAGGTTACACCATCAAGATGGAGGTTCCAATTTCATGAATCAGAGAAAGCAGTTAGACTTGATGGAGTTGTCACTGGGGAGCAACAACCAGAAGGAGGAGGAGGAAGGCAATAATTTGCAAGAATTAGGATCAGGATCTTCAAATTCAAACAGAAAGGAAGGTGCAGCAGCAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGTGACGTAGGGAAGCTGAACAGACTGGTGATACCAAAGCAGTATGCTGAGAAGTATTTCCCCCTTGACTCTTCATCCAACGAGAAAGGTCTTCTTCTCAATTTTGAGGACCGAAATGGGAAGCTGTGGCGGTTCAGGTATTCCTATTGGAACAGTAGTCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTGAAGGAGAAGAAGCTGGATGCTGGGGACATAGTTTCCTTTCAAAGGGGTCTTGGAGAATTGTATAGACATAGGTTGTATATAGATTGGAGGAGAAGGCCTAATAATGTCCCTGATCCTTCAACCTCTCTCATTAGTACTCCTTTCTTTCTTCCCAATCACTACCCTCTCAGATGGGGTGCTGCTGCTGCCAGATTTTACTCTCTCCCTTCCTCACCACCACCTCCTCCTATGCCTCCCTATCATCACCATTTTAATAATAATAATATCTATACTGGTTTTCACCAACAGCAGTACAGTAGTGGTGGTGGTGAGCACCTCAATTTGGGATCTGCAGGCTCACTCTATTATCTGAGGCCACCTCCACCATCAATGTCAATGTCAATGTCAATGTCAATGCCTGATCATCAACAACAAGACAGAGGGAACATTGTCCCCATGATCATTGATTCTGTACCAGTTTCTCATCATCATCATAATCACCACTATGCTGCTGCTGCTACTACTACTTCTCCTAGTGGTACTACTGGAAAAAGGCTGAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCACAGTCAGGAGAAGAAGAAGAAGAATCCAAAATATGTTTGTCCTCCTCCTCGGCTTCAGCAGAAAATGTGGCAATGGCTAATCCAACAAGGTTTGGGGATCAGAAAGAGAGAGGGGTGTTTGATTTGGATCCTTCTTTGCAATACCGGCAGTGA 1251 0.45 MELIQQVKGYSDSREEEEEEEAAAAAEIITITGEESSSSRLHHQDGGSNFMNQRKQLDLMELSLGSNNQKEEEEGNNLQELGSGSSNSNRKEGAAAVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPNNVPDPSTSLISTPFFLPNHYPLRWGAAAARFYSLPSSPPPPPMPPYHHHFNNNNIYTGFHQQQYSSGGGEHLNLGSAGSLYYLRPPPPSMSMSMSMSMPDHQQQDRGNIVPMIIDSVPVSHHHHNHHYAAAATTTSPSGTTGKRLRLFGVNMECASSQSGEEEEESKICLSSSSASAENVAMANPTRFGDQKERGVFDLDPSLQYRQ. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06105 416 MobiDBLite consensus disorder prediction 67 92 - -
Seca1g06105 416 ProSiteProfiles B3 DNA-binding domain profile. 103 208 IPR003340 GO:0003677
Seca1g06105 416 Pfam B3 DNA binding domain 103 207 IPR003340 GO:0003677
Seca1g06105 416 MobiDBLite consensus disorder prediction 31 55 - -
Seca1g06105 416 CDD B3_DNA 101 190 IPR003340 GO:0003677
Seca1g06105 416 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 374 IPR044800 GO:0003700
Seca1g06105 416 MobiDBLite consensus disorder prediction 365 416 - -
Seca1g06105 416 FunFam B3 domain-containing protein 96 217 - -
Seca1g06105 416 MobiDBLite consensus disorder prediction 1 55 - -
Seca1g06105 416 SMART B3_2 103 208 IPR003340 GO:0003677
Seca1g06105 416 MobiDBLite consensus disorder prediction 67 95 - -
Seca1g06105 416 Gene3D - 96 213 IPR015300 -
Seca1g06105 416 SUPERFAMILY DNA-binding pseudobarrel domain 100 193 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06105 Seca-Chr1 164409261 164411426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06105 60 366 RAV Transcription Factor Family AT2G46870 47.742 3.28e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g06105 B3 2.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06105 K09287 - gmx:100812161 345.125