Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06104 ATGGAGGATGGGAATAGGGTTCCGAGGGAGGGTGGTTCGTCCCCCTCTTACTGGCTGGATGCCTGTGAGGACATCTCCTGCGATTTTATCGATTTTGATGTGTCATCCATCGTCTCAGAGCAGCCTGATAACACTTCCAATCAGGACTTCTTCGGTGGGATTGATCGAATCCTGGACAGCATCAAGAACGGTGGTGGCCTCCCTCTTGAGGTTGAACCAAATTCCAATCCTAATGGCACTGCAGCAGCAGGAGGAGAACCATTGCCACCTAATGATGCACTTTCCAAGGTGCAGCAACAGTCTTTCACTCCACCTGCTTGCTTCAATGGCACTCCCGAAGATGCTTTTCGGAAGAATGGATTGGTTGGGGAGAAACATGGTCGTACTGCAACTGCTGATGCTTTGGAGCATTCAGGAGCTCAGAGCAACGGCTCCTGTAACAAGCTGTCAAATGGGAATCAAGGGGGTATTTTGGTTAGTCATTCTCAGGAAAATGGAGGTATGGCTCTGAATAGAGGTCATGATGTTGATGGTGAAGAAAGATGTGGCAAAAGGGCTAGGCTTGGCAGCTACAAGAATGAGAGGCCTTATTATGGCAGAGTGAATTATCAAGCCAAGGAGAGAGAGAGGTGTTTCAGTAATAGGAAGAGGCCAAGGGATAGGGATGAGATTGATAGGAGGGATAAAGATGGTGTGAGGAAAAGAGAACATTATGGTACTTGTGGCAGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAACAGAGGGGTTACTGGGAGAGGGATAAGTTAGGTTCCAATGGAATGGTCTTTCGCTTGGGCACTTGGGAAGCTGAACGTAATCGAGAAGAGAAAATAGCAAATGAGACAAAACAGGAAAGCAATGGAAAGCTTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAAAAAGCAAGACAGTATCAGCTGGATGTTCTTGAGCAGGCAAAGAGTAAAAATACCATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCCTGATTGCTGTTCTTCTCATGAAAAGCATACATGAGAATTTACAAAAACAAAATAAGAAAATGCTTGCAGTATTTTTGGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGGGAGCGAACTGGTTATCAAGTGGGACACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACTAAACATGTTTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCACAGCATAATAAAAATGGAAGCAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAAAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAAAAGAGACCATCCGTGTTTGGAATGACTGCTTCACCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATCCGTAATCTCGAAAGTAAGCTAGATTCAGTAGTTTGTACCATTAAAGATCGCAAAGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCGGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAGTCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTAGGACAATGGTGTGCATATAAGGTTGCACAGTCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCTCTTCTGAAATGTCAGCTGTCAGAGGGTGCAGTTTCTGACAAAAATGGGGGAGTTGATGACTCAGAGTATGGTGCAGCTCACAGTGGGTCTGAACATGAAGAGATCGAAGAAGGAGAGCTTCCGGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGATGTCATAATAGGAGCTGCTGTAGCTGATGGCAAGGTGACCCCCAAGGTGCAAGCACTAATCAAAATACTTCTCAAGTATCAGCACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTGGTTCTACCTAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCTAAGTTTCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGTCAATGCAATGTTGTTATTCGCTTTGACCTTGCGAAGACCGTTCTTGCATACATTCAGTCTAGGGGCCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAACGCCAGGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCGACCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTCGTGAGCTTAAATTCTGCTGTAGGTCTTATACACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCATGAAAAACCTGGAGGTCCCACTGAATATTCTTGCAAGCTTCAACTACCGTGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTTACTGACATGCTGTTGCCCGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCTCTTCCGGGGACTGCGAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCGACAACTCCAATTTGCTTCATCTTTTTATGTATTCCGTGAAGTGCGAAAATGTAGGGCATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGTCATCTCTTATCTTTAGAGGGTCGATAGATATCACTGAGAGTCAGTTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCGTCTACCACTCCTTGGGATCCTACAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTAGAGTTGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATAAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAAGCATATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTGGGGAAAATTGTAACTGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTCGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAACCATGTCGCACCTCCAATGTTGTGCAGGAAGAACAGGGAGCTAATCTTAATCTGTGAAGGAAGCTTCTGTTGTCACCTCTAA 4080 0.4414 MEDGNRVPREGGSSPSYWLDACEDISCDFIDFDVSSIVSEQPDNTSNQDFFGGIDRILDSIKNGGGLPLEVEPNSNPNGTAAAGGEPLPPNDALSKVQQQSFTPPACFNGTPEDAFRKNGLVGEKHGRTATADALEHSGAQSNGSCNKLSNGNQGGILVSHSQENGGMALNRGHDVDGEERCGKRARLGSYKNERPYYGRVNYQAKERERCFSNRKRPRDRDEIDRRDKDGVRKREHYGTCGRRDVRDRDWRDREQRGYWERDKLGSNGMVFRLGTWEAERNREEKIANETKQESNGKLDKKSEEAKERVPEEKARQYQLDVLEQAKSKNTIAFLETGAGKTLIAVLLMKSIHENLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNGGVDDSEYGAAHSGSEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACDNSNLLHLFMYSVKCENVGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKSSLIFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPTKAYLFVPMVGDKSLDPMNQIDWHLVETIIRVDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHINMTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQNHVAPPMLCRKNRELILICEGSFCCHL. 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06104 1359 Coils Coil 274 294 - -
Seca1g06104 1359 FunFam Endoribonuclease dicer-like protein 310 550 - -
Seca1g06104 1359 Pfam Dicer dimerisation domain 910 998 - -
Seca1g06104 1359 Gene3D - 309 553 IPR027417 -
Seca1g06104 1359 MobiDBLite consensus disorder prediction 65 88 - -
Seca1g06104 1359 Gene3D Dicer dimerisation domain 905 1006 IPR038248 -
Seca1g06104 1359 FunFam Endoribonuclease dicer-like 1 905 1006 - -
Seca1g06104 1359 Pfam Type III restriction enzyme, res subunit 313 481 IPR006935 GO:0003677|GO:0005524|GO:0016787
Seca1g06104 1359 Gene3D - 708 874 IPR027417 -
Seca1g06104 1359 MobiDBLite consensus disorder prediction 999 1022 - -
Seca1g06104 1359 MobiDBLite consensus disorder prediction 675 691 - -
Seca1g06104 1359 MobiDBLite consensus disorder prediction 284 311 - -
Seca1g06104 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 849 IPR027417 -
Seca1g06104 1359 MobiDBLite consensus disorder prediction 663 691 - -
Seca1g06104 1359 FunFam Endoribonuclease dicer-like 1 709 871 - -
Seca1g06104 1359 PANTHER DICER-RELATED 329 1251 - -
Seca1g06104 1359 SMART ultradead3 311 514 IPR014001 -
Seca1g06104 1359 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 499 IPR014001 -
Seca1g06104 1359 CDD DEXHc_dicer 314 513 - -
Seca1g06104 1359 Pfam PAZ domain 1272 1334 IPR003100 GO:0005515
Seca1g06104 1359 MobiDBLite consensus disorder prediction 209 238 - -
Seca1g06104 1359 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 882 IPR001650 -
Seca1g06104 1359 MobiDBLite consensus disorder prediction 996 1022 - -
Seca1g06104 1359 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 910 1005 IPR005034 GO:0016891
Seca1g06104 1359 SMART helicmild6 751 837 IPR001650 -
Seca1g06104 1359 Pfam Helicase conserved C-terminal domain 718 835 IPR001650 -
Seca1g06104 1359 CDD SF2_C_dicer 715 845 - -
Seca1g06104 1359 SMART PAZ_2_a_3 1253 1359 IPR003100 GO:0005515
Seca1g06104 1359 Gene3D paz domain 1256 1348 - -
Seca1g06104 1359 ProSiteProfiles PAZ domain profile. 1253 1334 IPR003100 GO:0005515
Seca1g06104 1359 SUPERFAMILY PAZ domain 1260 1341 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06104 Seca-Chr1 164364937 164374830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06104 734 877 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.34e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06104 K11592 - gmx:100811631 2282.68