Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06101 ATGGACGCATACTCCTCTGGAGAAGAAGTGGTTGTTAAGACGAGAAAACCATATACAATCACAAAACAAAGAGAACGATGGACAGAGGAGGAACATAGTAGATTTCTCGAAGCCCTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGGCACTATTTTGTTCATCATTAAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAAAAATTCTTTTCAAAGGGCTTGGATGTTAGCATGTCAGGTGATTTAGTTATGTTTGAATACAGACTAAATTTGGAGAAAGAGGCCCTTATAAAGGGTGTTCCAATAGGACAGGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCCCGTAAGACCAATGCTGGTGCCCCAACATTACATAGTGGATCAAAGTATGGAAAGCCTCTCATTTCAGTTGCATTTTCACATGGTAAACAAGCACTGGACTTCGAGAAAGAACCACTTCCAGAGAAGCATAATGTTGACGAAAGGCCAACAACTGTAAAAGAAAATAAGGATGAAAACTGCTCTAAAGCATTTACAATCCTCCAGGAGGCACACTGTTCATCTGTGTCTTCAGCAAACAAGAATTCAATATCAATGAGTGTGCCGCAGAGAAATTCATGCGCCTTAAGGGAGTTTATACCTTCAGTGAACGAGGTAATAACTCAAGATGAAACAAATGAATCTTTTGTCACTACTGAGATTGAAAATCAGAAGTTGGAGAAAGATAATGGCAAACACACACAAAAGACTATTGGCACCTGTAAAGTCTCTAAGTTGGAGAATTCTGGTTTTCCCAATTTGGTTCAAACTGAGAAAACAGATGGTCTTACTTGTGCATTAACAATAGATGAGATGCAAGGCAATCAGAATTACCCAAGACATATCACTGTGCATGTTGTTGATGGGAACCTTGGAACCAGTACACAAAATCCGTCCCAAGATATGATGATTCGAGACTCCATATTTAAGCCAATAGGAGGGGTTAATGGGCAACCTAATCCTTTCACCAATTCAGCTGTATCAAACACAAGTGAAAGTCAAAATAACACAGCAAGATCCTCTATTCATCAATCATTTCCTCCTTGTCCTCCTTTCACACAGCATACTCAGGATGATTACCAATCATTTCTTCACATGTCCTCCACATTTTCAAGTCTTATTGTCTCTACCTTGATGCAAAATCCTGCAGCCCATGCTGCAGCAAGTTTTGCTGCAACATTTTGGCCCTATGCAAATGCAGAAACTTCAGCAGATTCTCCTGCGTGCTCTCAAGGAGGTTTTCCATCTAGGCAAATTGGTTCACCTCCAAGTGTGGCAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCAGCCCATGGACTGCTTCCTTTGTGTGCTCCACTCCATACTGCTTTTGCCTGTCCTCCTGCTTCAGCTACTGCAGTTCCATCAACGAATATTGATGAAGCACCACCAAAGACAGAGCAAGGAGAGATTACACTACAAAATCCTCCTCTGCAAGATCAGATGCTAGATCTAGAATACTCGGAAGCTCTGCAAGCTCAACATTCAGCTTCTAAGTCACCAGCTGCTTCTTCATCCGAAACTGAGGAGAATGGAGATGCCAAATTAAATACATCAAAGGCTACTAGTAATCATGAGATGAACCAAGCAATTTCTGAGAACCTTGATTCCAACAAAATGAAGGGCAGAAAACTGGTTGACCGTTCCTCATGTGGTTCCAACACAACCTCTAGCAGTGAAGAGACTGATGTGCTAGAGAAGGAGGAGAAAGAAAAGGAAGATTCCACGACACCCGATGCGAACCATTTAGCTACTGAGCCTAGTAATCGTCGTGGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGACGAATCGCCTTTCAGGCTCTATTCTCCAGGGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGACTTGACAAAAAAGGATCATCAGATGGACAACATCAAGGATAACAAGCACTACACAGACTGCAAAGATTACCTTGGTAGCAAGAAATGCAGTTCTAATTGTGATGGGATGCTGAAAAACCTGCCATTTGTAGAAAATAACAATGAGGAGGAGGGACTGCTAACCATAGGTCTTGGACAAGGAAAGCTTAAGACTCATCGAACAGGGTTTAAACCTTACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGCATGGGAACGGTCTGCAACCAAGTTGAAGAGAAAGGTCCTAAGAGAATACGCATTGAGGGGGAGACTTCAACTTGA 2340 0.4295 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHSRFLEALKLYGRAWQRIEGTILFIIKHIGTKTAVQIRSHAQKFFSKGLDVSMSGDLVMFEYRLNLEKEALIKGVPIGQALDIDIPPPRPKRKPSNPYPRKTNAGAPTLHSGSKYGKPLISVAFSHGKQALDFEKEPLPEKHNVDERPTTVKENKDENCSKAFTILQEAHCSSVSSANKNSISMSVPQRNSCALREFIPSVNEVITQDETNESFVTTEIENQKLEKDNGKHTQKTIGTCKVSKLENSGFPNLVQTEKTDGLTCALTIDEMQGNQNYPRHITVHVVDGNLGTSTQNPSQDMMIRDSIFKPIGGVNGQPNPFTNSAVSNTSESQNNTARSSIHQSFPPCPPFTQHTQDDYQSFLHMSSTFSSLIVSTLMQNPAAHAAASFAATFWPYANAETSADSPACSQGGFPSRQIGSPPSVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASATAVPSTNIDEAPPKTEQGEITLQNPPLQDQMLDLEYSEALQAQHSASKSPAASSSETEENGDAKLNTSKATSNHEMNQAISENLDSNKMKGRKLVDRSSCGSNTTSSSEETDVLEKEEKEKEDSTTPDANHLATEPSNRRGRSISNLTDSWKEVSEEGRIAFQALFSREVLPQSFSPPHDLTKKDHQMDNIKDNKHYTDCKDYLGSKKCSSNCDGMLKNLPFVENNNEEEGLLTIGLGQGKLKTHRTGFKPYKRCLVEAKENSMGTVCNQVEEKGPKRIRIEGETST. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06101 779 ProSiteProfiles Myb-like domain profile. 19 76 IPR001005 -
Seca1g06101 779 MobiDBLite consensus disorder prediction 602 620 - -
Seca1g06101 779 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 80 IPR017930 -
Seca1g06101 779 SMART sant 23 78 IPR001005 -
Seca1g06101 779 MobiDBLite consensus disorder prediction 492 514 - -
Seca1g06101 779 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Seca1g06101 779 MobiDBLite consensus disorder prediction 621 636 - -
Seca1g06101 779 MobiDBLite consensus disorder prediction 113 144 - -
Seca1g06101 779 Gene3D - 26 79 - -
Seca1g06101 779 SUPERFAMILY Homeodomain-like 18 77 IPR009057 -
Seca1g06101 779 CDD SANT 26 76 IPR001005 -
Seca1g06101 779 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 78 IPR006447 GO:0003677
Seca1g06101 779 MobiDBLite consensus disorder prediction 164 186 - -
Seca1g06101 779 PANTHER SWI/SNF COMPLEX-RELATED 7 661 - -
Seca1g06101 779 MobiDBLite consensus disorder prediction 532 577 - -
Seca1g06101 779 MobiDBLite consensus disorder prediction 351 380 - -
Seca1g06101 779 MobiDBLite consensus disorder prediction 532 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06101 Seca-Chr1 164342526 164351435 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g06101 Myb_DNA-binding 9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06101 K12133 - gmx:778086 1079.32