Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06095 ATGCAGCTTTGCAACTCTGTTGTTCTTCCCATGGCACTGAAATCCGCAACTGAGCTGGGCGTATTTGACGTCTTGCAAAAAGCGGGTAGAGATGCTAAGCTCTCTTCCAAGGAGATTGCGTCTAAGCTTTCCTGCAACAATCCACAAGCAGCCGCAATGTTAGATCGCGTCCTCGCCCTTCTTGCCTCCCACTCTGTGCTTAACTGCTCTGTTCTTCCCGATGAACAAAACCTTGGATCCTTTCACAGACTCTACAGCATCACCCCTGTCGCCAGATTCTTCGCTCGCGATTCGGATGGTGTTTCATTAGGACCAGTTCATGGAACACATGCCTTTGAGTATCCGAGCTTGGACTCCAGGTTCAATCAAGTCTTTAATACAGCAATGATCAATCACACCACTTTAATTATGAAAAAGGTTCTTGAATGCTACAAAGGTTTTGAGGGCATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAACATGATCACTTCCAAATATCCTCATATTCAGGGTATCAATTTCGACTTGCCTCATGTCATACAACACGCCCCTTCCTATCCTGGAGTGGAACACGTTGGCGGCGATATGTTTGAAAGTGTGCCAAAAGGAGATGCCATCTTCATGAAGTGGATACTTCACGATTGGAGTGATGAGCATTGCTTGAAGCTTTTGAAGAATTGCTATGATGCTATTCCTAATGATGGGAAAGTGATAGTGGTGGAGGCAGTTCTTCCTATTATACCTGAGAATAATGCTGCTTGGAAGTGTGTCTCCCAAACCGATGTTCTGATGATGACTCAAAACCCGGGAGGGAAGGAGCGATCTGAGCAACAATTCATGGAACTTGCAACTGCAGCTGGATTTAGTGGCATTAAATATGGATGTCGTGTTCAATTAGAATTGGAAGATGAAGAATGCTTCTCGTATGCTACGCAGCTTGGCAGCTCTATTGTTCTTCCCATGGCACTGAAATCCGCAACTGAGCTGGGCGTATTTGACGTCTTGCAAAAAGCGGGTAGAGATGCTAAGCTCTCTTCCAAGGAGATTGCGTCTAAGCTTTCCTGCAACAATCCACAAGCAGCCGCAATGTTAGATCGCGTCCTCGCCCTTCTTGCCTCCCACTCTGTGCTTAACTGCTCTGTTCTTCCCGATGAACAAAACCTTGGATCCTTTCACAGACTCTACAGCATCACCCCTGTCGCCAGATTCTTCGCTCGCGATGATGCGATTCGGGAAGGGGGTATTCCATTCAACAGAGTTCATGGAACACATGCCTTTGAGTATCCGAGCTTGGACTCCAGGTTCAATCAAGTCTTTAATACAGCAATGATCAATCACACCACTTTAATTATGAAAAAGGTTCTTGAATGCTACAAAGGTTTTGAGGGCATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAATATTAACATGATCACTTCCAAATACCCTCATATCCAGGGTATCAATTTCGACTTGCCTCATGTCATTCAACATGCCCCTTCCTATCCTGGAGTGGAACACATTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGCAGATGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGCACTGCTTGAAACTTTTGAAGAATTGCTATAATGCCATTCCTGAGGATGGAAAGGTGATTGTTTTGGAGGCAGTGCTTGCTATTATACCTGAGAATAATGCTACTTGGAAGTTTGTCTCCCAATCGGATGTGCTGATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACTGAGCAAGAATTCATGGAACTGGCAACTGCAGCTGGATTTAGTGAATCCAACACAAAACTTGCCAACGGGGAAGACAGGCATCTTAATGCAGGAATAGAAAAAGAAGAAGATGATGGCCTCATGTTTGGCATGCAAATGATGGGTTCTTTTGTGATTCCAATGGCTCTGCGGTCTGCCATTGACCTGGGTGTCTTTGACATCTTAGCCAAAGCAGGTGAAGGTGCCAAACTCTCTGCAAAGGATATTGCACTTCAGATTGGCACCAAAAACCCCGAAGCTCCCATAATGTTGGATCGTCTTCTTAGGATGTTGGCCAGTCACTCTCTGTTACATTGCTCTGTTCCTCAAGATCCACAAAGCCTTGCTACTTTGCCTCAGAGGTTTTACAGCCTCTCCCATGGGTCCAAATATTTTGTCACTGATGCTGATGGTGTCTCTTTAGGACCCACCATGGCCTTGGTTGTGGACAGAGTCTTCTACCAAAGCTGCAGGGTTTATGGCATGCATGCCTTTGAGTACCCGAGTGTAGATCCCAAGTTCAATGACCTTTTTAACAAAGCTATGGTCAACATCACCACTATAATGATGAAGAGGATTCTTGAATTATACCAAGGTTTTGAGGACGTCACAAAGCTAGTCGATGTTGGTGGAGGACTTGGGATCAATCTCAAATTGATCACATCCAAATACCCTCATCTCAAGGCTATTAATTTTGACTTGCCTCATGTTGTACAACACGCCCCCGTCTATGCAGGTGTGGAGCATGTGGGAGGAGATATGTTTGAAAGCGTTCCCACAGGAGATGCTGTTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACATTGCTTAAAGCTTCTGAAGAATTGCTACAAGGCTGTTCCTGATGATGGGAAGGTGATTGTGGTGGACTCAATTCTGCCCATTGAGGCTGAGAATACAGCTATTGCCAAGAATGCTTTCGTATCTGATCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGAGAACCCAGCAAGAATTCATGGAATTAGCAAAGGGATCTGGATATAGTGGAATCAGATTCGTGTGTTGTGTATCTGGCCTCTGGGTCATGGAGTTCTTCAAGTAG 2913 0.4487 MQLCNSVVLPMALKSATELGVFDVLQKAGRDAKLSSKEIASKLSCNNPQAAAMLDRVLALLASHSVLNCSVLPDEQNLGSFHRLYSITPVARFFARDSDGVSLGPVHGTHAFEYPSLDSRFNQVFNTAMINHTTLIMKKVLECYKGFEGIKRLVDVGGGLGININMITSKYPHIQGINFDLPHVIQHAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPNDGKVIVVEAVLPIIPENNAAWKCVSQTDVLMMTQNPGGKERSEQQFMELATAAGFSGIKYGCRVQLELEDEECFSYATQLGSSIVLPMALKSATELGVFDVLQKAGRDAKLSSKEIASKLSCNNPQAAAMLDRVLALLASHSVLNCSVLPDEQNLGSFHRLYSITPVARFFARDDAIREGGIPFNRVHGTHAFEYPSLDSRFNQVFNTAMINHTTLIMKKVLECYKGFEGIKRLVDVGGGLGININMITSKYPHIQGINFDLPHVIQHAPSYPGVEHIGGDMFESVPKADAIFMKWILHDWSDEHCLKLLKNCYNAIPEDGKVIVLEAVLAIIPENNATWKFVSQSDVLMMTQNPGGKERTEQEFMELATAAGFSESNTKLANGEDRHLNAGIEKEEDDGLMFGMQMMGSFVIPMALRSAIDLGVFDILAKAGEGAKLSAKDIALQIGTKNPEAPIMLDRLLRMLASHSLLHCSVPQDPQSLATLPQRFYSLSHGSKYFVTDADGVSLGPTMALVVDRVFYQSCRVYGMHAFEYPSVDPKFNDLFNKAMVNITTIMMKRILELYQGFEDVTKLVDVGGGLGINLKLITSKYPHLKAINFDLPHVVQHAPVYAGVEHVGGDMFESVPTGDAVFMKWILHDWSDEHCLKLLKNCYKAVPDDGKVIVVDSILPIEAENTAIAKNAFVSDLLMMTQNPGGKERTQQEFMELAKGSGYSGIRFVCCVSGLWVMEFFK. 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06095 970 FunFam Caffeic acid 3-O-methyltransferase 299 409 - -
Seca1g06095 970 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 316 635 IPR016461 GO:0008168
Seca1g06095 970 Gene3D - 323 459 IPR036388 -
Seca1g06095 970 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 313 IPR016461 GO:0008168
Seca1g06095 970 PANTHER O-METHYLTRANSFERASE 318 616 IPR016461 GO:0008168
Seca1g06095 970 SUPERFAMILY "Winged helix" DNA-binding domain 633 740 IPR036390 -
Seca1g06095 970 Gene3D - 650 798 IPR036388 -
Seca1g06095 970 Gene3D Vaccinia Virus protein VP39 780 960 IPR029063 -
Seca1g06095 970 Gene3D Vaccinia Virus protein VP39 122 302 IPR029063 -
Seca1g06095 970 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 753 968 IPR029063 -
Seca1g06095 970 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 298 IPR029063 -
Seca1g06095 970 Pfam O-methyltransferase domain 412 613 IPR001077 GO:0008171
Seca1g06095 970 Pfam O-methyltransferase domain 763 952 IPR001077 GO:0008171
Seca1g06095 970 Pfam O-methyltransferase domain 106 294 IPR001077 GO:0008171
Seca1g06095 970 Pfam Dimerisation domain 11 62 IPR012967 GO:0046983
Seca1g06095 970 Pfam Dimerisation domain 653 704 IPR012967 GO:0046983
Seca1g06095 970 Pfam Dimerisation domain 326 377 IPR012967 GO:0046983
Seca1g06095 970 Gene3D - 8 140 IPR036388 -
Seca1g06095 970 FunFam Caffeic acid 3-O-methyltransferase 1 94 - -
Seca1g06095 970 SUPERFAMILY "Winged helix" DNA-binding domain 307 412 IPR036390 -
Seca1g06095 970 FunFam Caffeic acid O-methyltransferase 395 622 - -
Seca1g06095 970 Gene3D Vaccinia Virus protein VP39 441 616 IPR029063 -
Seca1g06095 970 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 643 970 IPR016461 GO:0008168
Seca1g06095 970 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 405 614 IPR029063 -
Seca1g06095 970 SUPERFAMILY "Winged helix" DNA-binding domain 1 97 IPR036390 -
Seca1g06095 970 FunFam Caffeic acid 3-O-methyltransferase 621 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06095 Seca-Chr1 164265202 164300873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06095 631 970 Monolignol Biosynthesis Gene Families AT5G54160 48.451 3.37e-114 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06095 K13066 - atri:130825453 622.468