Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06093 ATGCAAGCCGAAGAGCAAAGCAATATGGAGGCACAAAGCTCACAGCATGCACAAATTATTGAAATCAGTGGAGATATTCTTCCGGATGTAAGAAGGAACATTTGTGAGGAAGCACCATGTGGATTCTCGAATGCTGGATCCATCTCTAAGGATTCAGAAGAACGATCAACTTCAATGCGGAAGCTTTTGATGGCAGTTGTTCTGTGTGTTATTTTCATGAGCATTGAAGTAGTTGGTGGCATTAAAGCTAATAGCCTTGCAATTTTGACTGATGCAGCCCATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCATTGTTTTCATTATGGGCTGCAGGGTGGGAAGCCAATCCTCGCCAGTCATATGGATTTTTCAGAATAGAGATTCTAGGTGCTTTGGTTTCTATTCAGTTAATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGGAAGAATTGTCTCTGGCACTCATCATGTGGATGGCTTTTTAATGTTTGTTGTTGCTACCTTTGGTCTAGTGATTAACATCATTATGGCTCTTTTATTGGGTCATGACCATGGCCATGGCCATGGACATGGACATGGACATGATGATCATGGGCACAAGCATGGATTACAAGTGTCCACTCATCATCATCATCATGGTGTAAAACATCCAGAAGATCATACTCATGAAGATCACACACACCATCTTGCTAAACCACTTCTTGGTGATGGTGAATCAAATTCAAAAGAGAAGAAAAGGAGATGGAACATAAATGTACAAGGGGCTTATCTACATGTACTTGGGGACTCAATCCAGAGTGTTGGGGTAATGATTGGGGGAGCAATGATATGGTATAATCCTGAGTGGCAATTAGTTGATTTAATTTGCACTTTAATCTTTTCAGTAATTGTTTTAGGGACAACTATTAATATGTTGAGGAACATATTGGAAGTCCTTATGGAGAGCACACCACGTGAGATAGATGCAGCTAAGCTTGAAAAGGGGTTGCTGGACATGGAAGAAGTGGTGGCTGTTCATGAGTTGCACATTTGGGCCATTACAGTTGGGAAGATTTTATTGGCTTGTCATGTTAAAATCAGACCCCAAGTGGATGCAGAATTGGTGCTGGAAAAGGTTATAGACTATATCAGAACGGTTCATAACATCACTCATGTCACTATACAAATAGAGCGCTAG 1188 0.4099 MQAEEQSNMEAQSSQHAQIIEISGDILPDVRRNICEEAPCGFSNAGSISKDSEERSTSMRKLLMAVVLCVIFMSIEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEANPRQSYGFFRIEILGALVSIQLIWLLAGILVYEAIGRIVSGTHHVDGFLMFVVATFGLVINIIMALLLGHDHGHGHGHGHGHDDHGHKHGLQVSTHHHHHGVKHPEDHTHEDHTHHLAKPLLGDGESNSKEKKRRWNINVQGAYLHVLGDSIQSVGVMIGGAMIWYNPEWQLVDLICTLIFSVIVLGTTINMLRNILEVLMESTPREIDAAKLEKGLLDMEEVVAVHELHIWAITVGKILLACHVKIRPQVDAELVLEKVIDYIRTVHNITHVTIQIER. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06093 395 Gene3D Cation efflux protein transmembrane domain 58 316 IPR027469 -
Seca1g06093 395 NCBIfam cation diffusion facilitator family transporter 59 395 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca1g06093 395 MobiDBLite consensus disorder prediction 192 206 - -
Seca1g06093 395 Pfam Cation efflux family 62 317 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca1g06093 395 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 323 394 IPR036837 -
Seca1g06093 395 MobiDBLite consensus disorder prediction 192 245 - -
Seca1g06093 395 MobiDBLite consensus disorder prediction 220 245 - -
Seca1g06093 395 SUPERFAMILY Cation efflux protein transmembrane domain-like 56 318 IPR027469 -
Seca1g06093 395 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 14 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06093 Seca-Chr1 164250053 164253275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06093 9 395 Inorganic Solute Cotransporters AT2G46800 68.579 3.58e-177 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06093 K14689 - gmx:100794876 576.63