Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06090 ATGGGTGAAGTGGCGGCGGGGGTGATGCAGAGGCACGAGGAGGAACAGAGCAACCAAAATAACCGCAATGCCTCGGAGGAGGTGGTGGTTAGATGGGAGAGGTTTCTGCCTCGGATGGTGCTGAGAGTCTTGCTTGTCGAAGCTGATGATTCTACTCGCCAGATTATTGCTGCCCTTCTCCGTAAATGCAGTTACAGAGTTGCTGCAGTGCGTGATGGCTTAAAAGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTTATATTAACAGAAGTGGAGTTGCCATCAGTATCTGGATTTTCACTTCTTACCTTAATCATGGAGCATGACATTTGCAAAAACATTCCTGTCATAATGATGTCTTCTCGTGATTCAGTTAGCATGGTGTTCAAATGCATGTCAAAAGGTGCAGCCGATTTTCTTATAAAACCTGTTCGGAGGAATGAGCTAAGGAATTTGTGGCAGCATGTATGGAGAAGACATGCGATCAGCAGGCCTCCTCAAGATTTAACATTTCCACAGAATAAACTTGATGTTGCTGCAGAAAACAATGCTACAAGTAATAATTCTACTCGTTCTGTGGCTTCCACGCAGAAAAGTAATGAATGCAACGAGAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTGCGTACATGGAAAATGTGCAGGACACGTCCCAGCTGAAGAGTTCTTCAAATTTGAGCAATATTGACACAGTAAAGCACGGAAAGTCTACCAAATTTGAAAGGAAATCAGCTGAGCATAATGATGAAGCGGAAGATAAACCAATTATATTTGTATCTGAAGCTGCAATGTACAACAAAACCTTAACAGGTTTAAGGCTAGGTCAAGGCTATGATTATAGTAGAACAGAAAACCAAGATGAAGTTGTAAGAGCAGAGTTAAGCAAAACCCATCATCACATTCATGGATGCAGTGATGAACCAGTGAAACCTTCTACTAGGGCTATTGACTTGATTGCTACATTTGAGAATCTTCCAAAGAGCGCTGAAGAAAATTGTAGTTTCAACATTGGTAATACAGCCAAGTTTGGTTTTGATACACAATTGGAACTCTCTTTAAAAAGAGATTCTCCTGGCAGCTCATGTAAACCTGCAACTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCTTTTTCTCGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAGCACAGGATTCCAATGAGCAACATAAATTATCTGAAGATACAAATACTTCTCATCAGTATGATTGCAAAAATCAAAATCAGGAGAATATTACCACTCTAGCTATTGGTCAGTCTGGACAAGCTGAAGCAAAATTGCCAAACAGCCAGCTTGGATTCTTTCCTGGTATTGGAGTTACTTCTGATAATAAGTCTATGGGACACAGTAATCTTTTCCCTTCCATGCTTTCCACACAATCAGGTAAGCATCCCATATGGACCCCAAAACCAGTGTGCCACAAAGAGAGTTCCCCATTTCCTACAAGTACTTCTTCCCAGTCCAATACTGAAAGTCACAACTCAGAACATCATCACTGGTCAGATGATGCCACCTACACTTCTGATCAACATGTAGTTGATCAAAGAAATTTGGATTGTGCGATACATGATTCTCCTGCTACTGGTCAAAATCCTGGTAGTAGTTTTTACCATGATGCAGCAAATCATAATAGCAGTGGTGTATATGGAAGCGTAGGCAGCGGAAATGATGGAAATGCTCCTTCAGCTGTTGAATCCCAGAACAACCTTGACAGTTTTATGGATAGTGGACACCACATTTGTGATGGATTCAAAGGGACAGATTCTCATGGCACCAGCCAAAGACAAGCAGCTCTAACAAAGTTTCGACTTAAACGAAAAGACAGATGCTATGAGAAAAAGGTCCGATATGAAAGCCGAAAAAGACTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAATTTGTTCGCCAAGTGCACAATGAACAAGCAGTAGCAGATGCCGGTGGTGGTTCCTAA 2043 0.4209 MGEVAAGVMQRHEEEQSNQNNRNASEEVVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYRVAAVRDGLKAWETLKNKASDIDLILTEVELPSVSGFSLLTLIMEHDICKNIPVIMMSSRDSVSMVFKCMSKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQDLTFPQNKLDVAAENNATSNNSTRSVASTQKSNECNEKTSEAQSTCTSPFLEAESAYMENVQDTSQLKSSSNLSNIDTVKHGKSTKFERKSAEHNDEAEDKPIIFVSEAAMYNKTLTGLRLGQGYDYSRTENQDEVVRAELSKTHHHIHGCSDEPVKPSTRAIDLIATFENLPKSAEENCSFNIGNTAKFGFDTQLELSLKRDSPGSSCKPATEERQILNHSNASAFSRYSSSKLLQPLFPAQDSNEQHKLSEDTNTSHQYDCKNQNQENITTLAIGQSGQAEAKLPNSQLGFFPGIGVTSDNKSMGHSNLFPSMLSTQSGKHPIWTPKPVCHKESSPFPTSTSSQSNTESHNSEHHHWSDDATYTSDQHVVDQRNLDCAIHDSPATGQNPGSSFYHDAANHNSSGVYGSVGSGNDGNAPSAVESQNNLDSFMDSGHHICDGFKGTDSHGTSQRQAALTKFRLKRKDRCYEKKVRYESRKRLAEQRPRVKGQFVRQVHNEQAVADAGGGS. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06090 680 MobiDBLite consensus disorder prediction 480 531 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 480 494 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 184 216 - -
Seca1g06090 680 ProSiteProfiles Response regulatory domain profile. 42 160 IPR001789 GO:0000160
Seca1g06090 680 MobiDBLite consensus disorder prediction 556 600 - -
Seca1g06090 680 SMART REC_2 41 156 IPR001789 GO:0000160
Seca1g06090 680 MobiDBLite consensus disorder prediction 235 250 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 251 266 - -
Seca1g06090 680 ProSiteProfiles CCT domain profile. 624 666 IPR010402 GO:0005515
Seca1g06090 680 Pfam Response regulator receiver domain 43 154 IPR001789 GO:0000160
Seca1g06090 680 CDD psREC_PRR 43 146 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 506 520 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 551 600 - -
Seca1g06090 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 380 IPR045279 GO:0009736
Seca1g06090 680 Gene3D - 39 315 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 235 266 - -
Seca1g06090 680 MobiDBLite consensus disorder prediction 1 23 - -
Seca1g06090 680 SUPERFAMILY CheY-like 37 170 IPR011006 -
Seca1g06090 680 Pfam CCT motif 624 666 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06090 Seca-Chr1 164237683 164243196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06090 623 672 Response Regulator Gene Family AT5G24470 86.000 1.96e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca1g06090 Response_reg 7.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06090 K12130 - gmx:100779346 898.656