Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06087 ATGGCAGCTAAGGCTACTCTGTCTCTTTCCTTCACGTCACCCTCTTCTTCCTTACTCAACCATAAGCCTCAATTCGGAGGTGCGGTGAAACACTTCCTTCTGTGTTCTGCGGGGCCTTTTCCTTCCTTATGTCTTGTTGCAGGACGCAGCTCCAAGGCTAGGGTTTTCACTGCCTTAGCAGCGGTGGTGGATGAAGAAACGGAACAAGAACACGTGGAGCGAGAAAACGATGAAGAGGAAGAGCAGTTTAAGCAGAGAAGAGCTACCGAAGTGTATGTGTGCAACCTTCCAAGAAGCTGTGACACAGAACAGCTACTTCATATGTTCAAGCCTCACGGATCCATTCTATCTATAGAGGTTTGCCGGAATCCGGAGACTGGTGAAAGTAAAGGGAGTGCTTTTGTCACATTAGGATCTATTAACTCCGCAAAAAATGCAATTGTTGCATTGGATGGAATGGATGTTGGTGGGAGGGAAATGCGGGTTAGGTTTTCAGTTCAGATGAATCCAAGTAGGAGGAATCTTGAGACAATGAACTCGTCACCCAAGAAAACTATATACTATGAAGGTCCTCATAAGGTCTATGTTGGGAATCTTGCTAAGTCTGCTAAACCTGAAGACGTGAGACAATTGTTCAGTAGATTTGGTAATGTGGCTAGTGTAAGGGTGTTGCAAGATTTGAAACAAGGGAAAAACCGGGTCTATGCGTTTGTCTCTTATCTTTCTGAGAGAGAACGTGATGAAGCAGTGTCCCTCAATGGAACAGTAAAATCTGCCTCCCCCACTTCTCAATGTTCCTCTGCCACTTATTTCACTTGTTTGTGTCTCATGTCTATTCTCTCCTTTCTTGCAGGAATTTTATGGGCGTAA 870 0.4483 MAAKATLSLSFTSPSSSLLNHKPQFGGAVKHFLLCSAGPFPSLCLVAGRSSKARVFTALAAVVDEETEQEHVERENDEEEEQFKQRRATEVYVCNLPRSCDTEQLLHMFKPHGSILSIEVCRNPETGESKGSAFVTLGSINSAKNAIVALDGMDVGGREMRVRFSVQMNPSRRNLETMNSSPKKTIYYEGPHKVYVGNLAKSAKPEDVRQLFSRFGNVASVRVLQDLKQGKNRVYAFVSYLSERERDEAVSLNGTVKSASPTSQCSSATYFTCLCLMSILSFLAGILWA. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06087 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 167 IPR000504 GO:0003723
Seca1g06087 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 255 IPR000504 GO:0003723
Seca1g06087 289 SMART rrm1_1 90 163 IPR000504 GO:0003723
Seca1g06087 289 SMART rrm1_1 193 266 IPR000504 GO:0003723
Seca1g06087 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 161 IPR000504 GO:0003723
Seca1g06087 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 255 IPR000504 GO:0003723
Seca1g06087 289 SUPERFAMILY RNA-binding domain, RBD 85 177 IPR035979 GO:0003676
Seca1g06087 289 SUPERFAMILY RNA-binding domain, RBD 188 255 IPR035979 GO:0003676
Seca1g06087 289 Gene3D - 48 175 IPR012677 -
Seca1g06087 289 PANTHER OS02G0815200 PROTEIN 33 255 - -
Seca1g06087 289 Coils Coil 62 82 - -
Seca1g06087 289 Gene3D - 176 267 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06087 Seca-Chr1 164223307 164224514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06087 89 261 Eukaryotic Initiation Factors Gene Family AT1G49760 29.143 1.73e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06087 - - gsj:114400287 301.982