Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06085 ATGTCGGTTGGAGAGATTGCTTGTGCTTACGCTGCTCTCATCCTTCATGAAGATCGCATCGCTGTCACTGCCGAGAATATCTCTACCTTGTTGAAAACTGCAAAAGTTAAAGTAGAATCGTATTGGCCTACCTTATTTGCTAAACTTGCTGAGATGAAAAATCTTGAAGATTTGATAGCCAATGCTGGGGGAGGTGGGGCTCCGGTTGCCGTTGCAGCCGCCCCTATTGCTGCTGCAGGTGGCGGTGCCGCTGCTGCTGCTCCTCCTCAAGCCGAGGAGAAGAAGGAAGAACCCCAAGAAGAGAGTGACGACGACATGGGCTTTAGCTTGTTCGATTAG 339 0.5015 MSVGEIACAYAALILHEDRIAVTAENISTLLKTAKVKVESYWPTLFAKLAEMKNLEDLIANAGGGGAPVAVAAAPIAAAGGGAAAAAPPQAEEKKEEPQEESDDDMGFSLFD. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06085 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
Seca1g06085 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Seca1g06085 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Seca1g06085 112 MobiDBLite consensus disorder prediction 97 112 - -
Seca1g06085 112 Gene3D - 1 63 IPR038716 -
Seca1g06085 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca1g06085 112 CDD Ribosomal_P1 5 59 - -
Seca1g06085 112 MobiDBLite consensus disorder prediction 83 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06085 Seca-Chr1 164204823 164205598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06085 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.783 2.60e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06085 K02942 - gmx:100791962 125.946