Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06083 ATGGTTTCCCGTTATGATTTAATTTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAACATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGGTAAGTTTTATTTACACTATGTTTAA 450 0.3644 MVSRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKNIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVGKFYLHYV. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06083 149 Gene3D - 8 115 IPR012340 -
Seca1g06083 149 CDD RPA1_DBD_A_like 21 109 - -
Seca1g06083 149 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Seca1g06083 149 SUPERFAMILY Nucleic acid-binding proteins 15 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06083 Seca-Chr1 164199145 164199682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06083 20 132 Core DNA Replication Machinery Family AT2G06510 30.508 4.17e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06083 - - adu:110274503 170.629