Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06072 ATGTCAGAAGGTGCAGAAATTGATGAGCGAGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGATGGTGGTGAAGATGAAAATGTTGAAGGTAGTGTTGAAGAACACGAATACGAGGAGTCAGCAGCAGAGGCTGGTGGGAAAGACCAATTGCCTGAAGCAGAAAAAAATGACATTGCTACTGAATTTGTGGAAGATGAGCACAAAGCATCTCTCATTGACGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCTCCGCATGGTTCTGAAGTTTTTATTGGTGGACTTCCTCGGGATGCATGTGAAGATGATTTAAGGGAATTGTGTGAACCAATGGGTGATATTCTCGAGGTGCGGTTAATGAAAGATAGAGACACTGGAGAAAACAAGGGTTATGCTTTTGTGGCTTTTAAAACAAAAGAGGTAGCACAAAGGGCCATTGAGGAGATACATAGCAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCACTGTCTGAAACCAAGCACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACGGAGGATGAGTTTAGAAATGTCATTGAGGGTGTTGGTCCTGGAGTTGAAAACATCGAGCTCATAAAGGACCCTCAAAATCCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCGAGTTTTAAGCTAGATGTGAATACACCAACTGTCACATGGGCAGATCCAAAGAATTCACCTGACCATTCTGCTTCTTCGCAGGTTAAAGCTCTATATGTGAAGAACATACCTGAGAATATTACTACGGACCAGCTGAAGGAGATTTTCCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGACACGGAGAAATATGAAATTGATGGCCAATTGCTTGAAGTTGTTCTTGCCAAGCCGCAAACTGAAAAAAAACCTGATGGAGGTTATGCTCACAATCCTGGACTTTATCCAAACCATCTCCCACAACCTGGTTATGGTAATTTTTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTAGTTATCAGCAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAAGTGCCAGCTACTCGACCACGCAGAAATGACCGGAGCAATGGTCCAAGTGGCCAGTCAGGTCGAGGAGGCAGTGGTAATGATGAAGGCAATCGTAATAGAAGTAGACAAGCTTGGTTCTGCGACAACAAAACTATCCTTCAGATTCACCACCTCCCAAATGCACTCACTCACCCTTGCTTTCGTGGTTCTATTGGTGAAAGAACGTTGCCGGAAATCGGAATCTGCATTGGCGAGGCAAGGAAAGGAAGGGAGACATAA 1584 0.4337 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENVEGSVEEHEYEESAAEAGGKDQLPEAEKNDIATEFVEDEHKASLIDEDEKEKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQRAIEEIHSKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDEFRNVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDVNTPTVTWADPKNSPDHSASSQVKALYVKNIPENITTDQLKEIFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQLLEVVLAKPQTEKKPDGGYAHNPGLYPNHLPQPGYGNFSGNLYGSVGAGYGVAASYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPATRPRRNDRSNGPSGQSGRGGSGNDEGNRNRSRQAWFCDNKTILQIHHLPNALTHPCFRGSIGERTLPEIGICIGEARKGRET. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06072 527 SUPERFAMILY RNA-binding domain, RBD 103 252 IPR035979 GO:0003676
Seca1g06072 527 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Seca1g06072 527 Gene3D - 8 186 IPR012677 -
Seca1g06072 527 MobiDBLite consensus disorder prediction 8 48 - -
Seca1g06072 527 MobiDBLite consensus disorder prediction 448 475 - -
Seca1g06072 527 Gene3D - 187 267 IPR012677 -
Seca1g06072 527 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 471 - -
Seca1g06072 527 MobiDBLite consensus disorder prediction 1 71 - -
Seca1g06072 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Seca1g06072 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Seca1g06072 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Seca1g06072 527 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Seca1g06072 527 Gene3D - 268 389 IPR012677 -
Seca1g06072 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Seca1g06072 527 SMART rrm1_1 282 354 IPR000504 GO:0003723
Seca1g06072 527 SMART rrm1_1 107 180 IPR000504 GO:0003723
Seca1g06072 527 SMART rrm1_1 187 259 IPR000504 GO:0003723
Seca1g06072 527 SUPERFAMILY RNA-binding domain, RBD 259 373 IPR035979 GO:0003676
Seca1g06072 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Seca1g06072 527 CDD RRM_SF 108 180 - -
Seca1g06072 527 MobiDBLite consensus disorder prediction 49 71 - -
Seca1g06072 527 MobiDBLite consensus disorder prediction 440 475 - -
Seca1g06072 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06072 Seca-Chr1 164048029 164054287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06072 108 434 Eukaryotic Initiation Factors Gene Family AT1G71770 25.789 8.95e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06072 K13161 - gmx:100800974 771.541