Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06064 ATGGGCCAGTGTTATGGTAAGACCAATCCCACTGATCATGAGCCAAACACAACCACCATAATTGGCACCTCCGGTGACGCCACTGGCTACCCGACGCCCTCCTCCGCCGGTGTCGGCAACGGGTTTCCGTCGTCGGTGAAGAACACGCCTGCACGGTCCTCCTCGCACGCCAGCCCCTGGCCGAGTCCCTATCCTCAGGGAGTAAACCCGAGCCCGTCGCCGGCGAGGGCTTCCACGCCGAGGGGGTTTTTCCGGCGTCCTTTTCCGCCACCATCTCCGGCAAAGCATATAAGGGCGTCTCTGGCGAAGAGGCTTGGGCAGGCGAAGCCCAAGGAAGGCCCAATACCGGAGGAGCGTGGTTCGGAACCAGAGCAGGCGCTGGATAAGAGCTTCGGGTATAGCAAGAACTTTGGAGCAAAGTATGAGGTGGGGAAGGAAGTGGGGCGAGGGCATTTTGGTCATACATGCTCTGCCAGGGCCAAGAAGGGTGAACTCAAAGACCAAACTGTTGCTGTTAAAATCATTTCCAAGGCCAAGATGACCACAACAATATCAATTGAAGATGTTCGTAGAGAAGTGAAGATTTTAAAAGCTCTGTCTGGCCATAGGCATCTCACCAAGTTTCATGATGCTTGCGAGGATGCCAATAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACAGAGGAGGATGCAAAAGTTATAGTTTTGCAGATTCTAAGCGTGGTTGCCTTTTGTCATCTTCAAGGTGTTGTGCATCGTGATCTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATCAGGCCAGATGAACGGTTGAATGATATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTATAGTGTGGAAGCAGATATATGGAGTATTGGTGTTATTACCTACATCTTATTGTGTGGAAGTCGACCTTTTTGGGCACGAACAGAATCTGGAATTTTTCGTTCAGTGCTCAGAGGTGATCCTAAGTATGATGATTTACCTTGGCCATCAGTATCTCCAGAGGCCAAGGACTTTGTTAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAACTCACCCTTGGTTGAGGGATGATAGCCGTCCTATGACTCCTATTCCTTTAGATATATTAATTTATAAATTGGTGAAGTCTTATCTTCATGCAACACCATTCAAACGTGCTGCAGCAAAGGCCCTCTCAAAAGCCTTGACAGAGGATCAGTTGGTGTATCTTAGAGCACAATTCAGATTGTTGGAACCAAATAGAGACGGGCATGTCACCCTTGACAATTTCAAAATGGTTATCTTCTGCTCCACTGTTAATTCTTCCGGTCTTGTTATTGTTGATAAAGCTCTTGTACGTCATGCAACTGATGCCATGAGAGAGTCAAGGGTTCTTGACATCATACACACGATGGAACCACTTGCCTATAGAAAGATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCATATATCAATTGGAGGCACTTGATAGGTGGGAGGATATTGCCAGCACTGCTTTTGAGCATTTTGAGAGAGAGGGCAACCGTGTGATATCGATTGAAGAATTAGCAAGAGAGTTAAATCTTGGTCCTTCAGCTTATTCAATTATCAAAGATTGGATTAGAAATGATGGAAAGCTTAATTTACTTGGATATACAAAATTTTTGCATGGCTTTATTCCCCGCTCTTCAATCCCAAGACACCGTTAG 1839 0.4617 MGQCYGKTNPTDHEPNTTTIIGTSGDATGYPTPSSAGVGNGFPSSVKNTPARSSSHASPWPSPYPQGVNPSPSPARASTPRGFFRRPFPPPSPAKHIRASLAKRLGQAKPKEGPIPEERGSEPEQALDKSFGYSKNFGAKYEVGKEVGRGHFGHTCSARAKKGELKDQTVAVKIISKAKMTTTISIEDVRREVKILKALSGHRHLTKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRSVLRGDPKYDDLPWPSVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDDSRPMTPIPLDILIYKLVKSYLHATPFKRAAAKALSKALTEDQLVYLRAQFRLLEPNRDGHVTLDNFKMVIFCSTVNSSGLVIVDKALVRHATDAMRESRVLDIIHTMEPLAYRKMDFEEFCAAATSIYQLEALDRWEDIASTAFEHFEREGNRVISIEELARELNLGPSAYSIIKDWIRNDGKLNLLGYTKFLHGFIPRSSIPRHR. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06064 612 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Seca1g06064 612 MobiDBLite consensus disorder prediction 110 124 - -
Seca1g06064 612 Gene3D - 424 600 - -
Seca1g06064 612 FunFam Calcium-dependent protein kinase SK5 313 410 - -
Seca1g06064 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Seca1g06064 612 Pfam Protein kinase domain 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06064 612 CDD STKc_CAMK 140 402 - -
Seca1g06064 612 FunFam CDPK-related kinase 3 133 305 - -
Seca1g06064 612 MobiDBLite consensus disorder prediction 1 124 - -
Seca1g06064 612 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06064 612 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Seca1g06064 612 FunFam CDPK-related kinase 1 134 229 - -
Seca1g06064 612 MobiDBLite consensus disorder prediction 1 62 - -
Seca1g06064 612 SUPERFAMILY Protein kinase-like (PK-like) 136 432 IPR011009 -
Seca1g06064 612 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Seca1g06064 612 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06064 612 PANTHER SERINE/THREONINE-PROTEIN KINASE 125 584 - -
Seca1g06064 612 Gene3D Transferase(Phosphotransferase) domain 1 230 416 - -
Seca1g06064 612 SUPERFAMILY EF-hand 433 600 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06064 Seca-Chr1 163986035 163996316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06064 62 606 EF-hand Containing Proteins AT3G50530 59.464 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca1g06064 Pkinase 3.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06064 - - psat:127132076 1005.36