Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06061 ATGGAATATTCCCATTCATCAGATGAAGCTAGAGATGCAGCAGCAGCAATGATGAGAAAGAAGAGGAGCAAAAAGAAAAGGTTCAGCGACAAACAAATCCAATCATTGGAATCTATGTTTGAGACAGAGTCAAGGCTCGAACCTCTAAACAAACTGCAGTTGGCAACAGAGCTTGGGTTGCAGCCACGACAGGTTGCTATATGGTTTCAGAACAAAAGAGCTCGATGGAAGTCAAAGCAGCTTGAGAGAGACTACAACATACTTCAAGCCAATTATAACAATTTTAAACATGCAGTTGCAGAAGCTGAATGA 312 0.4135 MEYSHSSDEARDAAAAMMRKKRSKKKRFSDKQIQSLESMFETESRLEPLNKLQLATELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANYNNFKHAVAEAE. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06061 103 MobiDBLite consensus disorder prediction 1 17 - -
Seca1g06061 103 FunFam Homeobox-leucine zipper protein ATHB-7 7 79 - -
Seca1g06061 103 SMART HOX_1 21 83 IPR001356 GO:0003677
Seca1g06061 103 Pfam Homeodomain 22 77 IPR001356 GO:0003677
Seca1g06061 103 Coils Coil 71 103 - -
Seca1g06061 103 Gene3D - 14 87 - -
Seca1g06061 103 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Seca1g06061 103 PRINTS Lambda-repressor HTH signature 59 75 IPR000047 GO:0003677
Seca1g06061 103 PRINTS Lambda-repressor HTH signature 50 59 IPR000047 GO:0003677
Seca1g06061 103 CDD homeodomain 28 80 IPR001356 GO:0003677
Seca1g06061 103 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 99 IPR045224 GO:0003700
Seca1g06061 103 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Seca1g06061 103 SUPERFAMILY Homeodomain-like 9 81 IPR009057 -
Seca1g06061 103 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06061 Seca-Chr1 163945704 163946015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06061 22 95 Homeobox Transcription Factor Family AT2G46680 72.973 7.84e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca1g06061 Homeodomain 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06061 K09338 - fve:101301133 127.872