Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06060 ATGACAACCCACATTGATCACAGCCTCTGGATCATTGCTCTCGTCTCCAAATGCGCACAACAAAACCTTGCTTGGTCCCTCTTCATCATGGCCTCCCTCTGGCTAACCATGACTTTCTTTTACTGGTCTCACCCCGGTGGTCCCGCCTGGGGCAAATACTACTCCACCAAGAGAACGCCATCACTACTTCCTGGTCCCAAAGGCTGGCCTCTCATTGGAAGCATCACCCTCATGACTTCTCTTGCTCACCACCGTATTGCAGCAGCCGCAACTGCATGCACAGCCAAGAGGCTCATGGCCTTCAGCCTCGCCGACACACGTGCCATCGTCACGTGCCATCCTCACGTCGCCAAGGAGATTCTCAACAGCTCCGTCTTCGCGGATCGTCCCGTCAAGGAATCTGCATACTCCCTCATGTTCAACCGCGCAATCGGCTTCGCTCCTTACGGGGTTTACTGGCGAACTCTCCGCAAAATCGCCTCCACTCACCTCTTCTGCCCAAAACAAATCAAAGCCTCCCAACTTCACCGCTCTAAAATCGCCACGCAAATGGTTGACATGTTCAGAAACAGCCACCACCAACACACCTTACGTGTTCGCCAAGTGCTCAAGAAAGCTTCTCTCAGTAACATGATGTGGTCCGTCTTTGGACAAGAGTACATGCTGCATCAGTCAAACAACGGAACAGAACAAGAAGAAGAGCTTAGAGTATTAGTGGACGAAGGGTATGACCTGTTAGGTACCCTTGATTGGGGTGACCACCTTCCTTGGCTTGCACATTTTGACGCCCAGAAAATCCGGTTCAGGTGCTCCAACCTCGTCCCCAAGGTGAACCGCTTCGTCTCTAGAATCATTGCTCAACACCGAGCTCGTACTAAAACCCAATCGAACCATGACTTCGTTGACGTGTTGCTATCCCTTCAAGGACCCGATCAATTATCCGACTCCGATATGATCGCCGTACTTTGGGAAATGATATTTAGGGGAACAGACACCGTGGCGGTTTTGATCGAGTGGATACTCGCGAGGATGGTGCTTCATCCTGATGTGCAGTCTAAAGTGCAAGAAGAGCTTGATGCGGTGGTTGGGATATCACGCGCCGTCGAGGAGGATGACGTGGCGATGCTGGTGTACCTGCCGGCGGTTGTGAAGGAAGTGCTGAGGCTGCATCCCCCTGGCCCACTTCTATCGTGGGCCCGCTTGTCCATAAGCGATACGACCATTGATGGGTATCATGTTCCAGCGGGGACCACTGCTATGGTGAACATGTGGGCTATTTGCAGGGACCCACATGTGTGGAGAGACCCACTAGAATTTATGCCTCAAAGGTTTCTCACTGCCACTGGCACTGCTGATGATCTCTCCACTCTGGGGTCGGATCTCAGGCTCGCTCCATTCGGGTCGGGCAGGAGGGCGTGCCCCGGGAAGGCGCTGGGGTTGGCTACGGTGAGTTTCTGGGTGGCGTCGCTTTTACACGAGTATGAGTGGCTACCATATGATGGAGTTGATCTATCGGAGGTACTGAGGCTCTCTTGTGAAATGGCTAACCCTCTCACTGTTAAACTGCGCCCTAGGCGTAGCTTAAGTGCTTAA 1593 0.5298 MTTHIDHSLWIIALVSKCAQQNLAWSLFIMASLWLTMTFFYWSHPGGPAWGKYYSTKRTPSLLPGPKGWPLIGSITLMTSLAHHRIAAAATACTAKRLMAFSLADTRAIVTCHPHVAKEILNSSVFADRPVKESAYSLMFNRAIGFAPYGVYWRTLRKIASTHLFCPKQIKASQLHRSKIATQMVDMFRNSHHQHTLRVRQVLKKASLSNMMWSVFGQEYMLHQSNNGTEQEEELRVLVDEGYDLLGTLDWGDHLPWLAHFDAQKIRFRCSNLVPKVNRFVSRIIAQHRARTKTQSNHDFVDVLLSLQGPDQLSDSDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPDVQSKVQEELDAVVGISRAVEEDDVAMLVYLPAVVKEVLRLHPPGPLLSWARLSISDTTIDGYHVPAGTTAMVNMWAICRDPHVWRDPLEFMPQRFLTATGTADDLSTLGSDLRLAPFGSGRRACPGKALGLATVSFWVASLLHEYEWLPYDGVDLSEVLRLSCEMANPLTVKLRPRRSLSA. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06060 530 Gene3D Cytochrome P450 55 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 SUPERFAMILY Cytochrome P450 64 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 Pfam Cytochrome P450 64 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PANTHER CYTOCHROME P450 78A7-RELATED 8 526 - -
Seca1g06060 530 FunFam Cytochrome P450 78A5 55 525 - -
Seca1g06060 530 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 CDD CYP78 96 518 - -
Seca1g06060 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Seca1g06060 530 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g06060 530 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06060 Seca-Chr1 163934896 163936701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06060 1 527 Cytochrome P450 AT2G46660 66.048 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06060 K20619 - gmx:100799906 827.394