LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g06053	ATGGATACACTGTCCACCTCTGTTTCAACCCTCAAAATCCCACCAACAAATCGTGAACTCTATCACTTTACAAGATCTCCCTATGCAACCCCAACTCGTCCTCCACAACCACAACCACAACCCCACGTCTCCTCCACTTCCATACCCAACCTGCTCCCCAAGACCAACACTTTTTCACACAACAAGCGTTCTTCTTCTTCTCTATCATTCTCCTCCTCAAACACCACATCCCCACCTCTCAAACTCAAACCATCTTCTTCAATATTCCATCAAAAGCCTGCTACTGGTTATGCAGCAGCTGTCATAGATGTGGCTAAAAACACCAATTCCCTTCACTTGGTTCAAAAGGATGCTCAGAGGCTCTTGAAATTCCTCAAAAATCTGAACTTTCAATCATCTGTGGATGACCCTTCAATGGTTGAGGAGGTTAAAGGACAAGCCTTGAGAAAGGTGATAGAGCAGGGAAGTTTTCATAGGCATCTGGCTGTTATGTTGAAGATGCTGGTGAAGAAGAACAAGGTGGGAATTGTGCATGAAGTGTTGGAAGAGTTCGAGAGGATTTATGATGAGCTTTGTGGAACTCAAGTGGTATTGGTTTCGTCTACAACAAAGATGGGGGAAGAACAACTTTTTGGGATTGCTAAGGGCGTGCACCGAGTAAGTGGGGCTTTCAGGGTGAAGGTAAAGAATTTGGTTCAAGAGAGCTTGCCTTCTTTTGCAGTGTGA	726	0.4477	MDTLSTSVSTLKIPPTNRELYHFTRSPYATPTRPPQPQPQPHVSSTSIPNLLPKTNTFSHNKRSSSSLSFSSSNTTSPPLKLKPSSSIFHQKPATGYAAAVIDVAKNTNSLHLVQKDAQRLLKFLKNLNFQSSVDDPSMVEEVKGQALRKVIEQGSFHRHLAVMLKMLVKKNKVGIVHEVLEEFERIYDELCGTQVVLVSSTTKMGEEQLFGIAKGVHRVSGAFRVKVKNLVQESLPSFAV.	242

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g06053	241	MobiDBLite	consensus disorder prediction	26	87	-	-
	Seca1g06053	241	MobiDBLite	consensus disorder prediction	1	20	-	-
	Seca1g06053	241	PANTHER	ATP SYNTHASE DELTA CHAIN	69	237	IPR000711	GO:0015986\|GO:0046933
	Seca1g06053	241	Pfam	ATP synthase delta (OSCP) subunit	95	236	IPR000711	GO:0015986\|GO:0046933
	Seca1g06053	241	SUPERFAMILY	N-terminal domain of the delta subunit of the F1F0-ATP synthase	94	191	IPR026015	-
	Seca1g06053	241	Gene3D	-	94	185	IPR026015	-
	Seca1g06053	241	MobiDBLite	consensus disorder prediction	43	87	-	-

Showing 1 to 7 of 7 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g06053	Seca-Chr1	163878665	163879390	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g06053	94	236	Primary Pumps ATPases	AT4G09650	34.247	2.31e-21	87.4

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g06053	K02113		-	gmx:100526851	248.054

Showing 1 to 1 of 1 entries