Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06050 ATGGATTCTGGTGCTGTATTGGCATTGCCTGTGAACAATGAATTCAAAACAAGGGAACCTCCAGATTTTGAGGACGACTTTGTAGAGAAAGATCCTACCGGCCGGTATATTCGGTACAAAGAAATCTTGGGCAAGGGCGCTTTCAAGACTGTGTATGATTCTGATACTTGTTATAGGGGCTTTGATGAAGTTAATGGAATAGAAGTTGCTTGGAACCAAGTCAAGATTGATGAAATCTTGCAGTCAGCAGATGATCTTGCAAAATTGTATTCCGAAGTTCATCTATTGAAGTCTCTGAAACATGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTGTTAACATTATTACTGAGTTATTCACATCTGGAAATTTAAGGCAGTACCATCAGAAGCATAGATATGTTGACATGAAAGCCATAAAAGGTTGGGCTAGACAGATTCTTCAAGGCTTAGTATATCTTCACAGTCACAAGCCACCTATTATACACAGAGACTTGAAATGCGACAACATCTTCGTCAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTGTATGAAGAGGAATACAATGAACTTGTTGATGTCTATTCGTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTACCCGTACAGTGAATGCAGAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATTGAACCTGCATCCCTTAAAAGGGTGAGTGATCCCCAAATAAAGGGGTTTATCAAAAAATGTCTTGTTCCAGCATCCAAGAGATTGTCTGCAGAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGAGTCCAAAGGATCCAATCCTTGATCCCTTACAGTTACCTAGAAAAACTCTAAAAGCTTTAGATCTGTCCAAATCTGGTCATCTATCTATGGACCTAGATGCTGACTACAAACAGATCCCTATGAGTATCAGTACTGAGAACAGCCAGGGAAGTCCACATTGTCCAGTTCTTGAAGTTCAGAGGACATATAAAAACAATGAGTTTAGGTTGAAAGGGACCAAAAATGATGATAACTCAGTATCATTAATCTTGCGTATTGCTGATTTAAATGGTCAAGTAAGGAATATACATTTTCTCTTTTACATTGACACGGATACTGCAGTCTCTGTTGCCTCAGAGATGGTTGAAAATTTGGAGCTGGCAGATCATGATGTAGCCTTCATAGCTGAGCTCATTGATTACCTAATAATGAAACTTCTACCTGGGTGGAAGCCTTCATCTGATTATTCCTCAAGTGGAGGATTAAGTCTGTGCGATGGCTCTCCAACACTTAGAGATGACCAAACCTTAATGCCATGCCCATGTGGTTCTGTGGTCAGTAGTGTTCCCTCTGAATTGGTTTTTGATCAAGATAGCATTTCTGGGTTTAAAACTACTCAAAGACAAGGTTTTGCGACAGCTGAAGTGAGCTGCATGTTTAACATTGCTGATAATGCTACTTTTGAGAGTGAGCATAATTTGTCTCCTAGTTTGGCTAGCTTGGAAGATCAATATTCACAAGAATCTGAGATAGTTATTGAAGATGCTTGCATGAAAAATGACAACTGTCTTGATTCTGATGTTGATGGGAGTTATAAAGGATTGAGTTGGTCCACCTCCGAACTGGAGCTCGGGGATACATATTTTGAAGGCTGTAAATTGCAGACTACAAATTGCAGTGCTGAAGAAGGGATCATGATAAATGAATTCTCAAAGAACTCTCACACTCCAACCCCAGCTTTTTGTGAAACATCTAATGTTCTGAGCTTGAATAGCAGTTATTCTTCTCTGTCTTTAGCCGACAAAGACATTGACCTTGAACTAAAGCTTGAGCTTGATGCAATCGAGTCTAAGTATCAGCATTGGTTTCAAGAACTTTCTAGAATGAAGTCCGAGACATTGGAAGCCACCAGAAGGAAATGGATTGCCAAGAAGAAACTTGCTGTTCATTAA 2061 0.3969 MDSGAVLALPVNNEFKTREPPDFEDDFVEKDPTGRYIRYKEILGKGAFKTVYDSDTCYRGFDEVNGIEVAWNQVKIDEILQSADDLAKLYSEVHLLKSLKHENIIKFFNSWIDDKKKTVNIITELFTSGNLRQYHQKHRYVDMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECRNPAQIYKKVTSGIEPASLKRVSDPQIKGFIKKCLVPASKRLSAEELLKDPFLQVESPKDPILDPLQLPRKTLKALDLSKSGHLSMDLDADYKQIPMSISTENSQGSPHCPVLEVQRTYKNNEFRLKGTKNDDNSVSLILRIADLNGQVRNIHFLFYIDTDTAVSVASEMVENLELADHDVAFIAELIDYLIMKLLPGWKPSSDYSSSGGLSLCDGSPTLRDDQTLMPCPCGSVVSSVPSELVFDQDSISGFKTTQRQGFATAEVSCMFNIADNATFESEHNLSPSLASLEDQYSQESEIVIEDACMKNDNCLDSDVDGSYKGLSWSTSELELGDTYFEGCKLQTTNCSAEEGIMINEFSKNSHTPTPAFCETSNVLSLNSSYSSLSLADKDIDLELKLELDAIESKYQHWFQELSRMKSETLEATRRKWIAKKKLAVH. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06050 686 CDD STKc_WNK 35 300 - -
Seca1g06050 686 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 383 439 IPR024678 GO:0004674|GO:0005524
Seca1g06050 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca1g06050 686 Gene3D - 381 450 - -
Seca1g06050 686 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 669 - -
Seca1g06050 686 Gene3D Transferase(Phosphotransferase) domain 1 126 305 - -
Seca1g06050 686 FunFam probable serine/threonine-protein kinase WNK9 126 305 - -
Seca1g06050 686 ProSiteProfiles Protein kinase domain profile. 37 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06050 686 SUPERFAMILY Protein kinase-like (PK-like) 38 353 IPR011009 -
Seca1g06050 686 SMART serkin_6 37 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06050 686 FunFam Probable serine/threonine-protein kinase WNK1 22 124 - -
Seca1g06050 686 Pfam Protein kinase domain 40 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g06050 686 Gene3D Phosphorylase Kinase; domain 1 22 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06050 Seca-Chr1 163864934 163868549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06050 625 686 MAP Kinase Kinase Kinase AT5G41990 41.935 5.53e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca1g06050 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06050 K08867 - gmx:100272197 917.146