Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06047 ATGGAAGGGGTAGGTCCAAATTCATGCACAGATAGCAGCAGGGGTGCAGTGTCAGAGAAGAAGACAAGACCACAAGAGCAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTTTGCAAGACATGCAGAAGGTATTGGACAGAAGGAGGCTCTCTCAGAAATGTCCCTGTTGGAGGTGGTTCAAGGAAGAACAAGAAGCAGCATCATCTCCTCTCCTCCTCAAAGCTTCCTGACTTAAATCCACCAACAATTCCTAATTCCCAAAACCCTGAAATGCAAGATCTTAATTTGGCTTTCCCAACTATGGACAAGTATCATCAACACCATGCCATGTCTCCATATGTTGAAATTGTAGGTGATTCCACCACCACTCACCATACCTCAGCAATTGATCTGCTAAGGTCTGCAGGCATGCCTAATTATGTTGCTTCTCCTAATTCCATGATGTCAAGCTCCACCAATGCACTTTACCCTTCAGCAGCAGCAGGGTTTCCCATGCAGGAAATGAAACCAAACCTAATTGGCTTTTCAGTTGAAAACAGATCATATGGGGTCCAAGTCCAACAGAATGGTGGGAGTGGAAGACTTTTGTTCCCTTTTGGAGACATGAAGCAACTTTCTACAACTACTGTCCAAGTGGAACCCATTAAAGAACAACCAAATTCAACTGGATATTGGACTGGAATCATTGGTGAGGGCTCATCATGGTAA 762 0.4357 MEGVGPNSCTDSSRGAVSEKKTRPQEQQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKQHHLLSSSKLPDLNPPTIPNSQNPEMQDLNLAFPTMDKYHQHHAMSPYVEIVGDSTTTHHTSAIDLLRSAGMPNYVASPNSMMSSSTNALYPSAAAGFPMQEMKPNLIGFSVENRSYGVQVQQNGGSGRLLFPFGDMKQLSTTTVQVEPIKEQPNSTGYWTGIIGEGSSW. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06047 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 168 IPR045174 GO:0003700|GO:0006355
Seca1g06047 253 MobiDBLite consensus disorder prediction 1 15 - -
Seca1g06047 253 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Seca1g06047 253 MobiDBLite consensus disorder prediction 90 107 - -
Seca1g06047 253 MobiDBLite consensus disorder prediction 70 107 - -
Seca1g06047 253 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Seca1g06047 253 MobiDBLite consensus disorder prediction 1 30 - -
Seca1g06047 253 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06047 Seca-Chr1 163845568 163846329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06047 15 253 C2C2-Dof Transcription Factor Family AT3G61850 47.273 8.09e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca1g06047 zf-Dof 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06047 - - gmx:778110 285.034