Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06046 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGTTACACAGAGGTCCATGGACTCCTCGGGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCATTACCAAAAAGAGCTGGGCTTCTCAGATGCGGAAAAAGCTGCAGACTGAGATGGATGAATTATCTGAGACCAGATATAAAGAGAGGAAACATAACAGCTGAAGAAGATGACCTTATTATTAGAATGCATTCACTTCTAGGAAATAGATGGTCCCTCATAGCTGGAAGATTACCAGGACGCACAGATAATGAAATAAAAAACTACTGGAACACTCATCTCAGCAAAAAGCTGAGAAACCAAGGAACAGATCCAAACACACACAACAAGTTAACAGAACCAGCTGGTAAGAAGAAGAAGAACAGAGGTGACAAGAAGAAAAAGAATAAGGAGAAAATCATTAATAACAAAGGTGGGAATGGGATAATAGATCAGTCAGAGAAGACCTTAGTTTATCTACCAAAAGCTATAAGGGTGAGGGCTATATCATCATCTATACCCAGAACAGAGAGTACTGTCACACTGGAGTCAAATTCAAATAGTGGATCAACTAGCCAACAAGAACAGAAAGAGGAAGCAAAAGTGGGAGAAATGGAAAATGATGGGTTTGGAATATTTGGGGAAGAACATGATGATGAGCTGGTCAACAGCGAATGCTGCAGGTCTGCAGGTATGGATGATTCAAATGGTAGCCTTGAGAAGCTCTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAAGACAACCCACGCGAATTAGATTCTTTTGCTCAATCTTTATTGGCCTAA 843 0.4104 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHNKLTEPAGKKKKNRGDKKKKNKEKIINNKGGNGIIDQSEKTLVYLPKAIRVRAISSSIPRTESTVTLESNSNSGSTSQQEQKEEAKVGEMENDGFGIFGEEHDDELVNSECCRSAGMDDSNGSLEKLYEEYLQLLKVEEDNPRELDSFAQSLLA. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06046 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca1g06046 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca1g06046 280 MobiDBLite consensus disorder prediction 186 207 - -
Seca1g06046 280 CDD SANT 16 61 IPR001005 -
Seca1g06046 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca1g06046 280 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca1g06046 280 SMART sant 13 63 IPR001005 -
Seca1g06046 280 SMART sant 66 114 IPR001005 -
Seca1g06046 280 MobiDBLite consensus disorder prediction 186 213 - -
Seca1g06046 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca1g06046 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca1g06046 280 FunFam MYB transcription factor 68 129 - -
Seca1g06046 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca1g06046 280 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Seca1g06046 280 MobiDBLite consensus disorder prediction 115 155 - -
Seca1g06046 280 CDD SANT 71 112 IPR001005 -
Seca1g06046 280 Gene3D - 71 152 - -
Seca1g06046 280 FunFam Myb transcription factor 11 67 - -
Seca1g06046 280 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06046 Seca-Chr1 163789886 163791197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06046 1 154 MYB Transcription Factor Family AT4G38620 63.636 2.94e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g06046 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06046 K09422 - gmx:778044 370.163