Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06045 ATGGGTTCCCATGGTAATGAGGCAAAGATGAGGAGCCATCAACCTTGCGCAGCTTGCAGGATGCTACGCCGGAGATGTGACAGTAACTGCATACTTGCTCCATATTTCCCAACTGACGAGGTTGACAAATTTGTTGGAGTGCACAGAGTCTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAGACAAAGAGAGACGATGCTGTTAAAGCCATGGTGTACGAGGCAACGGCGAGGCTTAGAGACCCGGTTTATGGCAGTGCTGGAGCTATTTTGCAGCTTCAGAAGATGATTCAGGAACTGAAAGAGCACCTAGAATCCATGAAAATACGGGTAATGCAAGTGCGAGAACAAAAAGAGCAGTTGTTGAGCATCCTCAACAACAAAGCTAATGGACATCTTGATCCTGTATTTGATGGTTACAGCAATTTGCCAGTAGATTTTGATTATCTCATGGCCTCTGGTGATCCACTTGAATTTGCTGTAGAAGCAGGTGACTGGGTACATGCCAATATTAATAATAATACTATGTTAACACCCACTTGTTAA 558 0.4427 MGSHGNEAKMRSHQPCAACRMLRRRCDSNCILAPYFPTDEVDKFVGVHRVFGASNVIKMIQMVEETKRDDAVKAMVYEATARLRDPVYGSAGAILQLQKMIQELKEHLESMKIRVMQVREQKEQLLSILNNKANGHLDPVFDGYSNLPVDFDYLMASGDPLEFAVEAGDWVHANINNNTMLTPTC. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06045 185 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Seca1g06045 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 121 - -
Seca1g06045 185 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
Seca1g06045 185 Coils Coil 94 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06045 Seca-Chr1 163778734 163779742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06045 15 159 AS2 family AT2G28500 46.207 6.89e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g06045 LOB 5.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06045 - - ccaj:109796546 236.498