Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06041 ATGGCACATCTCGGAGGCGCCGCAGAAACAGGTTTGGGAGATGATGATCTGTTTACACAACTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTGATGGAGAGCGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTCAAGCCTCAACAAATCAGGAACTGAGCCAGCAAATTCCTCATTTCAATCTCCCCTCTAAGATTCTCTGCCGTGTTGTGCACATTCAGTTGTTGGCGGAACAAGAAACTGATGAAGTTTATGCTCGTATCACCTTGGTTCCAGAATCAAATGTGAGAATATTTGCCTGCTCTATTAAGATTGGATTTATTTTGTGGTTTTCTCAGCAAAATGAGCCGACAAGTCCCGACCCTAGTCTACCCGAGACCCAGAAACAGAAGTTTCACCATTTTAGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCAGTTCTGCGGAGGCATGCTACCGAGTGCTTACCTGAATTGGACATGACCCAGACAACCCCAACCCAGGAATTGGCAGCCAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCACATCCAAAAGATTGGTTGCTGGAGATGCCTTTGTGTTTTTAAGGGGAGAGAATGGTGAACTGAGAGTTGGTGTTAGGCGTCTTGCTCGGCAGCAAAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTATGACTTGTACCATGTTTGTGGTTTATTACAAACCTAGGACTAGCCAGTTTATTATTGGTCTGAAAAAATATCTAGAGGCAGTCAACAATAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCACCCGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGGGACATATCTCCAGGATGGTCAAACTCTCAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGGCCAGAGAGAGTTTCCCCATGGGAGATAGAGCCTTTTGTAACTTCTACTGCTTCAAATGTCCCTCAACCAGTGGTAAAGAGCAAAAGGTCCAGGCCTGCTGAGGTTGCATCTTCTGAAATTGCTCTAAATCCTCCTGCTTCAACTTACTGGTATCATGGACCATCACCTTTATCCCATGAGGTCACACAATTAGGTGGTGCTGCTGAAGTCCAAAACAACAAAAGCCCTGCTGTATGGTCTTTGAAGCAGAATGAACTTAATGGCAATGCTAACTCCTGCAGCGTGCATGTGGAAGGAATATGGCCATCTTCCCCACATTTGAATGTCTCTTCAAACTTTATTTCTGAACCTAAAAACAAAGGGGATGTTACAGCAAGATCATCTATCTCTGGTTATGCTCCTGTTTCGTGTAGGCCAAATGATGGTTCAGCACATGATCAAGTGGAAAGTGATAAAAAGACTGAGAATCCCATGGATTGCTGGTTATTTGGAGTTAATTTGACCAACAACTTTACTAATGCTGCCCTTCCAGAGAAAGAACTGGGATGTCCACCTTGTGGTCCCAAAGATTCTGTGTGTGTTGTTGCTGCATGTGAAACTGAGGGTGCTCAGAATCCCAATCATTCTAATGAGAGGCAGAGCAAGCAGGTCTCTGTACCATCCATGAGGACTCGGACTAAGGTCCAAATGCAAGGTGTTGCTGTTGGTCGTGCTGTTGACTTGACAATGTTAAAAAATTATGATGACCTCATAGATGAGCTTGAGAAGATGTTTGATATTAAGGGAGAGCTTCATGTGCAAAACAAATGGGCAATTACTTATACTGATGATGAAAATGATATGATGCTTGTTGGTGATGATCCTTGGCAGGAGTTCTGTACCATGGTGAAGAGGATTTTCATTTATTCAACGGAAGAAGTGAAGAAGATGAAATGCAAGCATTCTGCTTCTTCCTCAGAAGGTGAAGAGACTTTGTTGAGCCAAGATTCACAGAATAGGGATTAG 2073 0.4395 MAHLGGAAETGLGDDDLFTQLWKLCAGPLVDVPRDGERVFYFPQGHMEQLQASTNQELSQQIPHFNLPSKILCRVVHIQLLAEQETDEVYARITLVPESNVRIFACSIKIGFILWFSQQNEPTSPDPSLPETQKQKFHHFSKILTASDTSTHGGFSVLRRHATECLPELDMTQTTPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTCTMFVVYYKPRTSQFIIGLKKYLEAVNNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDISPGWSNSQWRSLKVQWDEPATIPRPERVSPWEIEPFVTSTASNVPQPVVKSKRSRPAEVASSEIALNPPASTYWYHGPSPLSHEVTQLGGAAEVQNNKSPAVWSLKQNELNGNANSCSVHVEGIWPSSPHLNVSSNFISEPKNKGDVTARSSISGYAPVSCRPNDGSAHDQVESDKKTENPMDCWLFGVNLTNNFTNAALPEKELGCPPCGPKDSVCVVAACETEGAQNPNHSNERQSKQVSVPSMRTRTKVQMQGVAVGRAVDLTMLKNYDDLIDELEKMFDIKGELHVQNKWAITYTDDENDMMLVGDDPWQEFCTMVKRIFIYSTEEVKKMKCKHSASSSEGEETLLSQDSQNRD. 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06041 690 Gene3D - 137 241 IPR015300 -
Seca1g06041 690 ProSiteProfiles PB1 domain profile. 579 671 IPR000270 GO:0005515
Seca1g06041 690 Pfam Auxin response factor 266 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca1g06041 690 MobiDBLite consensus disorder prediction 675 690 - -
Seca1g06041 690 SUPERFAMILY DNA-binding pseudobarrel domain 127 269 IPR015300 -
Seca1g06041 690 FunFam Auxin response factor 138 242 - -
Seca1g06041 690 CDD B3_DNA 138 240 IPR003340 GO:0003677
Seca1g06041 690 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 667 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca1g06041 690 Gene3D - 301 374 - -
Seca1g06041 690 FunFam Auxin response factor 301 372 - -
Seca1g06041 690 SUPERFAMILY CAD & PB1 domains 577 655 - -
Seca1g06041 690 MobiDBLite consensus disorder prediction 558 581 - -
Seca1g06041 690 SMART B3_2 140 242 IPR003340 GO:0003677
Seca1g06041 690 MobiDBLite consensus disorder prediction 668 690 - -
Seca1g06041 690 MobiDBLite consensus disorder prediction 487 509 - -
Seca1g06041 690 Gene3D - 575 667 - -
Seca1g06041 690 Pfam AUX/IAA family 563 615 IPR033389 -
Seca1g06041 690 Pfam AUX/IAA family 624 662 IPR033389 -
Seca1g06041 690 Pfam B3 DNA binding domain 140 240 IPR003340 GO:0003677
Seca1g06041 690 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Seca1g06041 690 FunFam Auxin response factor 574 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06041 Seca-Chr1 163731377 163736400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06041 13 666 B3 DNA Binding Superfamily AT4G23980 56.399 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca1g06041 B3 2.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06041 K14486 - gmx:100820503 966.452