Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06040 ATGGACCAACAACCACTACCTTGCCCCGAAAATGACGTAACCGCCGTCGCCAACAGCCGGAGTGGAGGCACGCGCCACCCTCTCTACCGTGGCGTCCGGAAGCGGCGCTGGGGAAGATGGGTGTCTGAAATTAGAGAGCCGCGCAAGAAATCGCGCATTTGGTTGGGTTCTTTTCCGGTGCCGGAGATGGCGGCGAAAGCATACGACGTCGCAGCGTACTGCCTCAAAGGTCGAAAGGCGCAGCTCAACTTTCCCGATGACGTGGACCACCTGCCAATTCCGACAACTTGCACGGCAAGAGACATTCAGGCGGCGGCGGCCAAGGCGGCGCGTATGATGAAGGCTTCGCCGGCTGATGAGAAAAGTAGCATTGTGTCCGACGGAGATAGCGGCGGCGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTGATGGACGGTGAGAGTTGCTGGAGTTCTCCGAGCGGGTCGTCGTGGACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTTGAGCTTTTGCCGCAGCAACCATTCATGGCGTGTCTATAA 552 0.5906 MDQQPLPCPENDVTAVANSRSGGTRHPLYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDDVDHLPIPTTCTARDIQAAAAKAARMMKASPADEKSSIVSDGDSGGDDFWGEIELPELMDGESCWSSPSGSSWTSSGDITAWPEVELLPQQPFMACL. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06040 183 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Seca1g06040 183 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Seca1g06040 183 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Seca1g06040 183 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Seca1g06040 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 144 - -
Seca1g06040 183 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Seca1g06040 183 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Seca1g06040 183 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Seca1g06040 183 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Seca1g06040 183 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Seca1g06040 183 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06040 Seca-Chr1 163682270 163682821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06040 7 183 AP2-EREBP Transcription Factor Family AT1G01250 56.614 1.36e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g06040 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06040 K09286 - gmx:100819971 259.61