Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g06038 ATGAAGGTTGAGGTGGGTTCAGGGCGCGTGTTATGGGATGATGAAGAGAAAGCCACAGTCGCTGCTGTTCTGGGCGCTAGAGCTTTTGAATTTTTGATCACGAACTCTGTGTCGAATGAGAGTGTGTTAATGGCTGTTGGGAGTGACGATAGCCTGCAGAACAAGCTCTCTGATCTCGTGGACCGTCCCAACATGTCCAATTTCAGTTGGAACTATGCGATTTTCTGGCAACTTTCTCAGTCAAAATCTGGGGACTGGGTTCTGGGTTGGGGAGATGGGTGTTGCAGGGAACCCAACGAGGAAGAAGAAGAGGGTGGAGGTGTTAGAGGAATCCTTAGTCTTCGCATGGAGGATGGGATGCAGCAGAGTTTGAGGAAGAGGGTGCTGCAGAAACTGCACACCACGTTTGGTGGTTCAGACGAGGACAATTACGCTTTTGGCCTTGACCGTGTCACTGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTCCCACGCGGACATGGTGGACCTGGTAAGTGTTTTGCCTCAGGGAAACATTTGTGGATGAAATCTGTTTCTGATTACTGTGTACGATCTTTCTTGGCTAAATCCGCTGGAATTCAGACAGTTGTTTTAGTACCTACTGATTTGGGAGTGGTTGAGTTGGGTTCTGTGAGAATGCTACCTGAGAGCTTTGAGTTATTACAGGCCATACAATCTGTGTTTTCCACTCAATCATCATACCCTAAGGTGGCTGTGGTGAATAACAAGAGAGATGAGAGTGTCCTTTTTCCTATTGGAGGGGACAATAACGTTGATGGAGTTCCAAAGGTTGTTGTGAACACAGGCCGTACAACTACTTTCAGGGAGAAGCTTGCTGTTAGAAAAATGGAGGATAGGCCATGGGGAGTCCACCCCAATGGGAGTAGCATTAACTTTCCCAATGTTAGAAATGGTGTTCATGGTTCAAGTTGGGGAGGAGTCAATCATGGTGGTGTGAGACAGCCTACTCCAACTCCAAGTCCTGCTGAAATTTTTGCTCATAGGTCATCCACAACAAGCAATAATGTCCCTGAGGTGGTAGCTAATGGTTTGAGACATGATTTCAGGCTCAACAACAACTATCAGCTGCAAAGGCAGGTGCAAATGCAAATTGACTTTTCAGGAGCTACTTCAATGCCTTCTGTGAGACCAGTTATTGCTGAATCTGAACTTTCTGATGTTGAGGCTTCTTGCAAGGAGGAGCAACCTGGTCCTGCTGATGATAGGAGGCCTAGGAAGCGAGGCAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCATGTAGAAGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAACGTTTCTATGCATTAAGAGCTGTAGTTCCTAATATCTCCAAGATGGACAAGGCATCATTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAGGCAAAACTAAAGATCATGGAGTCTGAAAGAGAGAGATTTGGAAGCACTTCAAGGGATGGAAGATCAGAGAGTCATCAGAACATAGCTCCTGATGTGGACATTCAAGCTGCACAAGATGAGGTCATTGTAAGGGTGAGCTGCCCTATTGATGCTCATCCTGTTTCAAAAGTAATCCAAACATTCAAAGAGACACAAGTTAGTGTTGTAGAGTCAAAACTCTCTGCTGCAAATGATACTATCTTCCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTTACAAAGGACAAGTTGATTGCAGCATTTTCTCAAGAATCCAACTCCTTACAGCCACTGTCATCTGTTGGGTAG 1803 0.457 MKVEVGSGRVLWDDEEKATVAAVLGARAFEFLITNSVSNESVLMAVGSDDSLQNKLSDLVDRPNMSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEEGGGVRGILSLRMEDGMQQSLRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWMKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRMLPESFELLQAIQSVFSTQSSYPKVAVVNNKRDESVLFPIGGDNNVDGVPKVVVNTGRTTTFREKLAVRKMEDRPWGVHPNGSSINFPNVRNGVHGSSWGGVNHGGVRQPTPTPSPAEIFAHRSSTTSNNVPEVVANGLRHDFRLNNNYQLQRQVQMQIDFSGATSMPSVRPVIAESELSDVEASCKEEQPGPADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGRSESHQNIAPDVDIQAAQDEVIVRVSCPIDAHPVSKVIQTFKETQVSVVESKLSAANDTIFHTFVIKSQGSEQLTKDKLIAAFSQESNSLQPLSSVG. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g06038 600 Gene3D - 426 498 IPR036638 GO:0046983
Seca1g06038 600 Coils Coil 479 499 - -
Seca1g06038 600 CDD bHLH_AtAIB_like 430 507 - -
Seca1g06038 600 FunFam Transcription factor bHLH13 426 500 - -
Seca1g06038 600 MobiDBLite consensus disorder prediction 403 444 - -
Seca1g06038 600 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 433 482 IPR011598 GO:0046983
Seca1g06038 600 Pfam Helix-loop-helix DNA-binding domain 437 483 IPR011598 GO:0046983
Seca1g06038 600 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 436 496 IPR036638 GO:0046983
Seca1g06038 600 PANTHER MYC 38 585 IPR045084 GO:0003700|GO:0006355
Seca1g06038 600 SMART finulus 439 488 IPR011598 GO:0046983
Seca1g06038 600 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 238 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g06038 Seca-Chr1 163655326 163657128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g06038 8 600 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.050 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g06038 bHLH-MYC_N 1.8e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g06038 - - adu:107491937 818.15